KEGG   Parabacteroides sp. CT06: CI960_21735
Entry
CI960_21735       CDS       T05011                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
parc  Parabacteroides sp. CT06
Pathway
parc02020  Two-component system
Brite
KEGG Orthology (KO) [BR:parc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CI960_21735
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:parc03021]
    CI960_21735
Transcription machinery [BR:parc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CI960_21735
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF GerE HTH_24 HTH_23 HTH_11 HTH_Tnp_ISL3 PF0610-like_N HTH_Mga HTH_40 HTH_38 HTH_DeoR HTH_10 HTH_28 HTH_36 HTH_AsnC-type HTH_Tnp_4 Xre-like-HTH HTH_20 NirdL-like_HTH PCI Ppx-GppA
Other DBs
NCBI-ProteinID: AST55777
LinkDB
Position
4998859..4999425
AA seq 188 aa
MKVDGHLLIDLKNGDEKAFETLFWKYNEHVYHFIYSLLYEKSMAEDLTQNVFLKIWEKHE
TIDVEQNFDAYLFTIARNLVYKETENRLLSEKLTESLQRQLSDVDSLMEERIDAESLREY
INSLIEELPLSRREIFRLSRHEHLSYKEIAERLSISEKTVETQLSRALRFLRDRLSSDGF
LCLITLFL
NT seq 567 nt   +upstreamnt  +downstreamnt
atgaaagtggatggacatttgcttatagatctgaagaatggagatgaaaaggcttttgag
actctattctggaaatataatgagcatgtatatcattttatttactcattactatatgaa
aaatctatggcagaggacttgacccaaaacgtttttcttaagatttgggagaagcatgag
acgatagatgtggagcaaaactttgacgcctatctattcaccatcgcccgtaacttagtt
tataaagagacagagaatcggctactctccgagaaactgacggaaagcctacaacgacag
ctatcagatgttgattcgcttatggaagagcgaattgatgcggagtctttacgggaatat
attaatagcttgatagaagaattgccgttgtcccgtcgggagatatttcgtttgagccgt
catgagcatttatcctataaagaaatagcggaacgcctctctatctctgaaaagactgtg
gagacacagttgagtagggctttgcgttttttgcgagatcgactttcttctgatggcttt
ctttgccttataacactctttttatag

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