Polynucleobacter arcticus: DN92_00240
Help
Entry
DN92_00240 CDS
T09901
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pard
Polynucleobacter arcticus
Pathway
pard03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pard00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DN92_00240 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pard03021
]
DN92_00240 (rpoC)
03400 DNA repair and recombination proteins [BR:
pard03400
]
DN92_00240 (rpoC)
Enzymes [BR:
pard01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DN92_00240 (rpoC)
Transcription machinery [BR:
pard03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DN92_00240 (rpoC)
DNA repair and recombination proteins [BR:
pard03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DN92_00240 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl_2
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
QKM59598
UniProt:
A0A6M9PK28
LinkDB
All DBs
Position
42293..46555
Genome browser
AA seq
1420 aa
AA seq
DB search
MKALLDLFKQTQGDEQFDVIKIGLASPEKIRSWSFGEVRKPETINYRTFKPERDGLFCAK
IFGPTKDYECLCGKYKRLKFRGVICEKCGVEVTLAKVRRERMGHIELAAPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVVDEGMTPEGAMKRGQIMSEDEYIAKTEEYGDGAF
TAIMGAEGIRDLLRSIDIDREVETIRADLKATGSDAKIKKYAKRLKVLEAFQTSGIKPDW
MIMEVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIIVRNEK
RMLQEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKSGRFRQNLLGKRVDYSGRSVIV
VGPTLKLHQCGLPKLMALELFKPFIFNKLETLGIATTIKAAKKEVESQTPIVWDILEEVI
REHPIMLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEA
QMEARTLMLASNNVLFPANGEPSIVPSQDVVLGLYYATRDKINGKGEGMVFANITEVIRA
YEAGQVELASRVAVRITEFEIVDKKAEGDARFAEKTSIYQTSVGRAILSEILPKGMTFDE
INKPLKKKEISRLINTSFRKCGLRETVIFADRLLQSGFRLATNAGISVAIDDMLIPTSKE
RIITEASTKVKEYDKQFMSGLVTNQERYNNVVDIWGAAGDQVGKAMMDELSHVDVLDRNG
KTVRQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ
YFISTHGARKGLADTALKTANSGYLTRRLCDVTQDLVVIEDDCGATSGVTMKALVEGGEI
IEALRDRILGRVCIGDIVHPDTQEVIVVNDTLLDEDHVDEIVALGIDEVKVRTVLSCLTR
FGLCAKCYGRDLGRGGLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRALVASNIE
AKSNGALKFSGTMRVVKNAKGEQIVISRSGEALIVDDNGRERERHKVPYGATLLLKEDAA
VKAGASLATWDPLTRPIISEYAGIARFDNVEEGVTVAKQVDEVTGLSTLVVIDGKRRSAA
SKGVRPMINLVDDKGGEVMIAGTDHPVNIGLQVGALITVKDGQKVEVGEVLARIPIESQK
TRDITGGLPRVAELFEARSPKDAAVLAKVTGTVSFGKETKGKQRLVITDMDGEANEFLIP
KEKQVLVHDGQVVNKGEMIVEGPADPHDILTLRGIEELAIYIVDEVQDVYRLQGVKINDK
HIEVIVRQMLRRVQITDGGDTAYITGEQVERSKLYDANDLVIAAGKRPAQFENVLLGITK
ASLSTDSFISAASFQETTRVLTEAAIMGKTDTLRGLKENVIIGRLIPAGTGLAYRRARKV
REQFERDRAQMIAAEEEAMADLPVEIEAEVIAPAAEADPS
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgatttatttaagcaaacgcagggtgatgagcagtttgatgtcatc
aagattggtcttgcatcccctgagaaaattcgctcatggtcttttggtgaagttcgcaaa
ccagaaaccatcaactatcggacttttaagcccgagcgtgatggtctgttctgcgccaaa
atttttgggccaaccaaagactacgagtgcttgtgtggcaagtacaagcgcttaaagttc
cgtggcgttatctgcgaaaagtgtggcgttgaagttacgcttgctaaggtacgtcgtgag
cgcatgggccatattgagttggcggcccctgtagcgcacatttggttcttgaagtcattg
ccatcccgcttgggtatggttctagatatgactttgcgggatattgaacgcgttctttac
tttgaggcctatgtcgttgttgacgaaggcatgacacctgaaggcgcaatgaagcgcggc
cagatcatgtctgaggacgagtacattgccaagactgaagagtatggtgacggtgcattt
accgccatcatgggcgctgaaggtattcgtgatctcctgcgttcgattgatatcgatcgt
gaagttgagaccattcgtgctgacttaaaagcgactggtagcgatgccaagatcaagaaa
tatgctaagcgcttaaaagtgctcgaggcgttccagacttcaggcattaagcctgattgg
atgatcatggaagtattgccagtattgccacctgaattgcgcccattagtgcctttggat
ggcggtcgttttgctacctccgatttgaatgacctctatcgtcgcgtgattaaccgtaac
aaccgtctcaagcgcttgttagagttgcgcgcaccagagatcattgttcgcaatgaaaaa
cgcatgttgcaagaagcggttgactcattgctcgataacggtcgtcgcggtaaggctatg
actggcgctaacaagcgtccgttgaagtccttggctgagatgattaaaggtaagagcggc
cgtttccgtcaaaacttgctgggtaaacgtgttgactattcaggtcgttcagtcatcgtt
gttggaccaacattaaaactacatcagtgtggcttgccaaaattaatggccttggaatta
ttcaagccgtttattttcaacaagctcgagactttaggaatcgcaactacgattaaggct
gcgaagaaagaagttgaaagccagactccaatcgtttgggacattctcgaagaggtgatt
cgcgaacatccaatcatgttgaaccgtgcgcctacattgcaccgccttggtattcaggct
tttgagccaatgctgattgaaggcaaggcaatccaattgcacccattagtctgcgcagca
tttaacgccgactttgacggtgaccaaatggcggttcacgttcctttgtcgctcgaggcg
caaatggaagcacgtacattgatgttggcttcgaacaacgtattgttcccagctaacggc
gagccatcaatcgttccttcccaggacgtggtgttgggtctgtactacgctacacgtgac
aagattaacggtaaaggcgaaggcatggtcttcgctaatattactgaagtcattcgtgca
tacgaggctggccaggttgaattggcctcacgcgttgctgtgcgtattactgagtttgag
atcgtggacaagaaggcagagggcgatgcccgttttgcagaaaagacttcgatttatcaa
acttcagttggccgtgcgattctgtcagagatcttgcctaagggcatgactttcgacgaa
atcaataagccactgaagaaaaaagaaatctcacgcttgatcaacacttcattccgtaag
tgcggtcttcgtgaaacagttatttttgctgaccgtctattacagtctggtttccgcttg
gcgactaacgccggtatctcggttgcgatcgacgatatgctgattccaacttctaaagag
cgcatcatcactgaagcttctaccaaagttaaggaatatgacaagcagttcatgtcaggt
ctcgtaaccaatcaagagcgttataacaacgtggttgatatctggggagctgctggtgat
caggttggcaaagcgatgatggatgagttgtcacatgtggacgtgctcgatcgcaacggt
aagactgtgcgtcaagaatcctttaactccatctacatgatggcggattctggtgcgcgt
ggatctgcggcgcagattcgtcagttggccggtatgcgtggtttgatggcgaagcctgat
ggctccatcattgaaaccccaattactgcgaacttccgtgaaggtttgaatgtgttgcag
tacttcatttctactcacggtgctcgtaagggtctggccgatacggcattgaagacagcg
aactcaggttacttgacacgtcgtttgtgcgacgtaactcaagacctcgtggtcatcgaa
gatgattgcggcgcaacttctggcgtaaccatgaaggcgcttgttgaaggcggcgaaatt
atcgaagccttgcgtgatcgtattttgggtcgcgtatgtattggtgacatcgttcatcct
gacacacaagaagttattgttgttaatgacacattgctagacgaagatcatgttgatgaa
atcgttgctttgggtatcgacgaagttaaagttcgtacagtgttgtcatgcttaactcgc
tttggcttgtgcgccaagtgttatggacgtgatttaggtcgtggtggtttggtgaacgtc
ggtgaggcagttggtgtgatcgctgctcaatctatcggtgagccaggtacacagttgact
atgcgcaccttccacatcggtggtgctgcgtcgcgtgcattggttgcaagcaacattgaa
gcgaagtctaacggtgcattgaagttctctggcacgatgcgtgttgtgaagaacgcgaag
ggtgagcagatcgtgatttcacgttcaggcgaagctttgatcgttgatgacaatggtcgc
gagcgtgagcgtcataaggtaccttatggtgcaacgctcttgttgaaagaagatgcagca
gtgaaggctggcgcaagcttagctacatgggatccgttaacacgtccaatcatctctgag
tacgctggtattgctcgcttcgataacgttgaagaaggcgttactgtagctaagcaggtt
gacgaagtaaccggcctctccactttggtggtgattgacggtaagcgtcgcagtgctgct
agcaaaggcgttcgtccaatgatcaacttagttgatgacaaaggtggcgaagtgatgatt
gccggtactgatcatccagtcaatattggtttgcaagttggcgctttgattaccgttaaa
gatggtcaaaaagttgaagttggtgaagtattggcgcgtattccaatcgaatcacagaag
actcgcgacattaccggtggtttgccacgtgttgcagaattgttcgaagcacgttcacca
aaagatgctgctgtattggctaaagtcactggaaccgtttccttcggtaaagaaaccaaa
ggtaaacaacgtttggtcattaccgatatggacggcgaagccaatgaatttttgattcct
aaagagaagcaggttctcgttcatgacggtcaagttgtgaacaagggcgagatgattgtg
gaaggcccagccgatccacacgatatcttgacactcagaggtattgaagagttggcgatc
tacatcgttgatgaagttcaagacgtttaccgtttgcaaggcgtgaagattaatgacaag
cacattgaagtgatcgtgcgtcaaatgttgcgccgcgtgcaaattactgatggtggcgat
actgcctacatcactggtgagcaagttgagcgctcaaaactgtatgacgccaacgattta
gtgattgctgcaggtaagcgcccagctcagtttgagaacgtattactgggtattactaaa
gcatccttgtcgacagacagcttcatttcagcggcttctttccaagaaaccacccgtgta
ttgactgaagccgcaattatgggcaagaccgatacactccgtggcctcaaggaaaacgtc
attattggtcgcttgattcctgcgggtactggcttggcttatcgccgtgcacgcaaggtc
agggagcaatttgagcgtgatcgtgcgcaaatgatcgctgccgaagaagaagcaatggct
gatttgcctgtagaaatagaggctgaagtgattgctcctgctgcggaggcagatccaagc
taa
DBGET
integrated database retrieval system
