Polynucleobacter arcticus: DN92_02765
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Entry
DN92_02765 CDS
T09901
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pard
Polynucleobacter arcticus
Pathway
pard03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pard00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DN92_02765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pard03019
]
DN92_02765
Enzymes [BR:
pard01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DN92_02765
Messenger RNA biogenesis [BR:
pard03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DN92_02765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QKM60046
UniProt:
A0A6M9PQE9
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All DBs
Position
complement(524209..525651)
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AA seq
480 aa
AA seq
DB search
MINTVPEINLPTGAAESSAPPATITFADFGLDPKIQKAVSEQGYNTPTPIQAQAIPHVLA
GSDLMGAAQTGTGKTAAFVLPIIQQILRHASSSASPARHPIRALVLTPTRELAVQVAENA
ASYSKHTDLRAAVVYGGVDMKEQVATLRGGVEILIATPGRLLDHIGSKVANLSQVEILVL
DEADRMLDMGFLPDLQRIIDLIPAQRQTLLFSATFSPEIKKLAQSYLRTPVTVEVARQNA
AADTVKQVIHMVASADKQRAIVKVLEARTRQGLSRQCIIFTNSRLGCAKLSRALEREGIK
AGAIHGDKSQGERTLTLDAFKSGAIEALVATDVAARGLDIPSMPCVINHELPYNAEDFIH
RIGRTGRAGSKGDAIALVDASEKRLLDDIEKLMKRKLDVQPLPEGNPSSSSSPSSSSASS
RSASRYEAPAKMSDPFFYKPYEPSAAPQPTSVTTNSEEKKVGITPAKPAVGALLGGFKKK
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
ttgataaatactgttcctgaaataaacctccccaccggcgctgctgagagcagcgccccc
ccagcaacaattacttttgctgactttggcttagaccctaagattcaaaaagcggtatcc
gagcagggttacaacaccccaactccgattcaagcccaagctattccccatgttttggct
ggcagcgatttgatgggtgcagcacaaactggtaccggtaagacggccgcttttgtactg
cccatcattcaacagattttgcgtcacgctagtagcagcgcttcacctgcgcggcatccc
attcgtgccttagtcttaacaccaacacgtgagttggctgttcaggttgctgagaacgca
gcaagctactcgaagcacacggatttacgcgctgctgtggtttatggtggcgtggatatg
aaagagcaagtggcgacattgcgtggtggcgtggagatcttgatcgctaccccaggacgt
ttgctcgatcacattggctccaaagtggcgaatctctcccaagtggaaatcctggtcttg
gatgaagccgatcgtatgctcgatatgggtttcttgccagacttacagcgcatcattgat
ttaattcctgcgcagcgccaaacattattgttctcagcaacgttttctcctgagattaaa
aaattagcacagagttatttgcgtacaccagtcacggtagaggtggcgcgtcagaatgca
gcagctgataccgtcaaacaagtgatacacatggttgccagcgctgataagcagcgcgcg
attgtcaaggtgcttgaggcacgtactcgtcaaggtttatcacgtcagtgcattattttt
accaacagccgtttaggttgcgcaaaattatctcgagcgctagagcgtgagggtattaaa
gcgggcgcgattcatggcgacaagagtcagggcgagcgtacgttaactttggatgcattt
aagtctggtgcgattgaagcactggtggcaacggatgtggctgcacgtggtctcgatatt
ccatcgatgccttgcgtgattaatcatgagttaccttacaacgctgaagactttattcac
cgtattggtcgtactggtcgtgcaggtagtaagggcgatgcgattgccttagttgatgcc
agtgaaaaacgcttactcgatgacatcgaaaagttgatgaagcgaaagttagatgttcag
cctttgcctgaaggcaatcctagctctagttctagccctagctctagctctgcatcaagc
agaagtgcgtcacgatacgaggcgccggcaaaaatgtcagacccgtttttctataagccg
tatgagcctagtgctgcacctcagccgacctctgtcactactaactccgaagagaaaaaa
gtcggcattacgcctgcgaagccagccgttggcgccttactcggcggctttaagaagaag
taa
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