Polynucleobacter arcticus: DN92_05655
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Entry
DN92_05655 CDS
T09901
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pard
Polynucleobacter arcticus
Pathway
pard03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pard00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DN92_05655 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pard03400
]
DN92_05655 (mfd)
Enzymes [BR:
pard01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DN92_05655 (mfd)
DNA repair and recombination proteins [BR:
pard03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DN92_05655 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AroM
CTE_SPB4
HemY_N
Motif
Other DBs
NCBI-ProteinID:
QKM60565
UniProt:
A0A6M9PNV0
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All DBs
Position
1112817..1116359
Genome browser
AA seq
1180 aa
AA seq
DB search
MSDGLKLAPPIPAPRAGQRFTFSGLVGSADAALIAQSALRYRSKFSVMVIFCAQAQEAQR
LLEEIPAFAPQLKTRLLPDWEILPYDHFSPHQDLVSERLATLYELLNGSCDIVLVPITTA
LQRLGPPNFLSGHTFFFRQGDKLNEAALKLQLQQAGYDPVSAVMRPGEYSIRGGLIDLFP
MGSSLPYRLDLFGDEIEQIRAFDPDTQRSLYPVKEVRLLPGHEFPFDDASRTAFRGRWRE
VFEGDPTRCSIYKDANLGIPSAGIESYLPLFFEESSSVFDYFPRSGDPVWIVSTGDVEEA
IKSFWKDTLSRYEFLKHDLDRPILHPSELFLDVDQFFTATKSNARLGLEKETKEPPQFLA
VPDLAVHRRDTDPINRLRALVSQEKVRILICSDSNGRKESIRQLFEESNAIAGQNGRPLY
SLKPESFEGVADFIKSDALFGLVTAQLFNGFTWPSENLIIVTEAELFTTTARQRRKGKVS
ESADPDMLFKDLSELKIGDPVVHSDHGIGRYQGLVLLNLAPPKEEPIFEEFLHLVYAKEA
TLYVPVQQLQMVTRYAGSDPDSAPLHQLGSGQWDKARRKAAQQIRDTAAELLSLYAARAI
RKGHAFEFSAHDYAAFAESFGFEETPDQANAIAAVIGDMTSGTPMDRLVCGDVGFGKTEV
ALRASFVAVMGGKQVAILAPTTLLAEQHVATWKDRFADWPVRIVELSRFKTTKEINAALE
AIAKGDADIIIGTHKLLSKETQFANLGLVIVDEEHRFGVRQKDALKALRAEVDILTLTAT
PIPRTLGMAMEGLREFSVIATAPQKRLAIKTFVRREGDGVIREAVLREIKRGGQVYFLHN
EVETIQNRKHALQELIPEASISVAHGQMHERELESVMREFVTQRTNILLCTTIIETGIDV
PTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDPEALSKQAQLRLNAIQAME
ELGSGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTEMLNRAVKSLRSGKEPDLLSP
LQATTDVNLGVPALLPSDYCPDVHERLSIYKRFAGTNDFSELMGLREELVDRFGDLPDQA
KSFYETHRLRLEMDGFGIKKIDATPASIQIQFIPNPPIDPMKIIRLIQSSKHIQLNGQDK
LKILPQKEKDFEKLEQRLDHIRKILRSLNESAMLNTVHVN
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatggattaaaactagcaccccctatacctgcgccgcgggctgggcagcgcttt
accttttcaggcctagttggctctgcagatgctgccctcattgcccaatccgccctccgc
taccgctcaaaattctcagtcatggtgattttttgcgctcaggcgcaagaagctcagcga
cttttagaggaaattcctgcctttgcgccacagcttaagacacgcctactccccgattgg
gagattctgccgtatgaccatttttctccgcatcaagatttggtatctgagcgcctagcg
acgctatatgaattattaaatggtagctgcgacattgtcttagtaccaatcactacagcc
ctacaaagactgggtcctcccaactttttatcaggtcatacttttttctttaggcaaggc
gacaagctcaatgaggcagcactaaagctacagctacaacaagccggatatgatccggtg
agcgcagttatgcgccctggtgaatacagtattcgcggaggcttgattgatctattcccc
atgggctccagcttgccgtatcgcctcgatctctttggtgatgagatagagcaaatacga
gctttcgatcccgatacccagcgtagcttgtatccagttaaggaagtgcgcctcttaccg
ggccatgaatttccgtttgacgatgcgtcacgcaccgccttccgtggccgctggcgtgaa
gtattcgagggtgatccgacgcgttgctccatctacaaagatgccaacttgggtattccg
agtgccggcattgagtcttatcttcccctcttctttgaagagtcctccagcgtgtttgat
tacttcccgcgctcaggtgatccagtatggattgtgagtactggtgatgtcgaagaagcg
attaagagtttttggaaagatacactttctagatatgaatttttaaaacacgatcttgat
cgccctattcttcatccctctgaattatttctggatgtagatcaattctttactgcaact
aaatccaacgcaagattagggctagaaaaagaaacaaaagaaccgccacaatttttagcg
gtaccagatttagcagtacatcggagagatactgatccaataaatcgactgcgagcttta
gtttctcaagaaaaagtgcgcatactgatttgtagcgatagcaatggccgcaaagaatct
attcgccagctatttgaagagagtaatgcgatcgccggtcaaaatggacgacctctttac
tcgctaaaacctgaaagcttcgagggtgttgctgatttcatcaagagcgatgctttgttt
gggctggttaccgcccaactatttaatggttttacttggccttctgagaacctcatcatc
gttacagaggccgagctgtttactacaacagcgcgccagcgacgtaagggcaaggtaagc
gagagtgctgatcccgatatgttgttcaaggatttatctgaactcaaaatcggtgatccc
gtagtacattccgaccatggtattggccgttaccagggtttagtgctgctgaatttagcg
ccccccaaggaagagcctatttttgaagagttcttgcacctagtctatgccaaagaggct
accctgtacgtgcctgtgcagcaactacagatggtcacgcgctatgcaggttctgatcct
gactcagcaccattacatcaactcggtagtgggcagtgggataaagcaagacgcaaagct
gcacaacaaattcgagataccgctgcagaactattaagcctctatgcagccagagcgatt
cgcaagggtcacgcttttgaattctcagctcatgattacgctgcttttgcagaaagcttt
ggctttgaagagacgccagatcaagccaatgcgattgctgcagtcattggtgacatgacg
agtggcacccccatggatcgtttggtgtgtggtgacgtaggctttgggaaaactgaagtt
gctctacgtgccagcttcgttgcagtcatgggcggcaaacaggtagccatattagcccca
accacattgctcgctgaacaacatgttgccacctggaaagatcgctttgctgattggccg
gtacggattgttgagctctcccgctttaaaaccactaaagaaatcaatgccgctttagaa
gctatcgccaaaggcgatgctgacatcattattggtactcataagctcctctcaaaagaa
acccagtttgctaacttaggcttagtgatcgtcgatgaagagcatcgctttggtgtgcgc
cagaaggatgcactcaaagcattgcgtgctgaagtcgatattttaactttaacagcgaca
cctatcccgcgaactctaggcatggcgatggaaggcttgcgagaattctctgtcattgcc
acggcgcctcaaaaacgtcttgcgattaaaacttttgtacggcgtgaaggtgatggtgtt
attcgagaggcggtcctccgtgagattaagcgcggcggccaagtctatttcttgcataac
gaagtagaaactattcaaaatcgtaagcatgctttacaagagctcatacccgaagcgagt
attagcgttgctcatggccaaatgcatgagcgggaactagaatcagtgatgcgtgagttt
gttacacaacgcacaaacatcttgctatgtactaccattattgaaacaggcattgacgtt
ccgactgcaaataccatcatcatgcatcgcgccgataagtttggcttagcgcagttacac
caattacgcggtcgcgttggacgctcgcatcaccaggcatatgcctatttattggttccc
gatcctgaggctttaagcaagcaagcacagcttcgcttaaatgcaattcaagcgatggaa
gaattaggctctggcttctatttagcaatgcatgatcttgagattcgtggtgcgggtgaa
gtcctaggcgataagcaatcaggtgagattcatgaaattggctttcagttgtataccgag
atgctaaatcgcgctgttaagtccctgcgtagcggtaaagaaccggaccttttatcgccc
ttgcaggctacaacggatgtcaatctaggtgttcccgccctattgcccagcgattactgc
ccagatgttcatgaaagactctcgatttataagcgatttgcaggaacaaatgatttttca
gaactaatgggcctcagagaggaattggttgatcgttttggtgatttacccgatcaagca
aaatccttctatgaaacccatcgcctacgactcgaaatggatggatttggtatcaaaaaa
attgatgcgaccccagcatccattcagattcagttcatccccaatccgcccattgatcct
atgaagattattcggctaattcagtcctcaaaacatattcaactcaatggacaagataag
ctcaagattcttccgcaaaaagagaaggatttcgagaagctagagcagcgtttagaccat
atccgcaagatactcaggagcctcaatgaatcggctatgcttaatacggtgcatgttaac
taa
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