Polynucleobacter arcticus: DN92_06410
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Entry
DN92_06410 CDS
T09901
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pard
Polynucleobacter arcticus
Brite
KEGG Orthology (KO) [BR:
pard00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pard03009
]
DN92_06410
Enzymes [BR:
pard01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
DN92_06410
Ribosome biogenesis [BR:
pard03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
DN92_06410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRM5-TYW2_MTfase
Methyltransf_31
Methyltransf_25
RrnaAD
Methyltransf_15
Cons_hypoth95
MTS
PCMT
Methyltransf_11
UPF0020
TRAM
Methyltransf_23
Methyltransf_32
Motif
Other DBs
NCBI-ProteinID:
QKM60695
UniProt:
A0A6M9PP77
LinkDB
All DBs
Position
complement(1265266..1266699)
Genome browser
AA seq
477 aa
AA seq
DB search
MRRGEKPVHIVVTEPIRVESLDLDAQGIARLVPNEEELNQGQSGKVIFIQGALPTELVTY
VVTRDKARFSKAKVLNILKPAVFRAEPKCKAFGVCGGCTMQHLDIRAQVAMKQRVLEDDL
KHIAKVAPEEILRPMGGPAWEYRHRARLSAVNRSIKKGTVLIGFHEGKSGYVADMTACEI
LPGHVSALLPAMRQLVNGLSIVDRMPQIEIAVGEPEDPNSDDPKKTRPVTALVFRNLLPL
TSADEQLLRDFADEHAVWIWLQPKGIETVAPFYPLTGKLCYRLPEFGIEMPFKPADFTQV
NHLMNRALVSRAIRLLEVQASDRVLDLFCGIGNFTLPLARRAQSVLGIEGLESLTTRAKA
NAEHNQLADTVSFMQSNLFEVTPETIASWEKAERWLMDPPREGAMEICQALAQLYEQGSD
LPPQRIVYVSCNPKTLARDADILCHQAGYVLKSAGIVNMFPHTSHVESMAVFERSTN
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcgtagaggtgaaaagccagttcacattgttgtgactgagccaatacgagtggagtct
ctggatctagatgcacaagggattgctcgcttggtgcctaacgaggaagagcttaaccaa
ggccaaagcggcaaagtaatctttattcaaggtgctttgccaaccgagttggttacctat
gtcgtcactagagataaagcccgctttagtaaagctaaagtactcaacattcttaaaccc
gccgtctttagagctgagcctaagtgcaaagcctttggcgtttgcggtggttgcacgatg
cagcatttagatattcgggcacaagtagctatgaagcaacgcgtgctagaagatgactta
aagcacatcgctaaagtggcacccgaggaaatcctgcgtcctatgggagggccagcatgg
gagtatcgacatcgtgcacgtttgagcgcagtgaatcgctcgattaaaaaaggcaccgtg
ctgattggatttcatgaggggaaaagtggctatgttgcggacatgactgcttgcgagatt
ttgcctgggcatgtatctgctttacttcccgcgatgcgtcaattagtcaatggtttatct
attgtggatcgcatgccccaaattgaaattgcggtaggtgagcctgaggatccgaattca
gatgatccgaaaaaaacgcgcccagtcaccgctttagtattcagaaacctattgccgcta
acatcagccgatgagcagcttctcagggattttgctgatgagcatgcagtttggatctgg
ttacaacccaaagggatagaaaccgttgcaccgttctatccgctcactggcaagctttgc
tatcgcctgccagagtttggaattgagatgccgtttaagccggcagactttacgcaagtc
aatcatctgatgaaccgtgctttagtgagtagagcgattcgcctcctagaggttcaggca
agtgatcgcgtactcgacttgttttgtggcattggtaacttcacgctcccattagcccga
agagctcagtctgtcttgggtattgaaggtttagaaagtctaacgaccagagctaaggcg
aacgcagagcacaatcagctggcagacacggtgagttttatgcagagcaacttatttgaa
gtcacgccagagacgattgcctcatgggaaaaagcggagcgctggttgatggatccaccc
cgtgaaggcgctatggagatttgccaggccttagcccaattgtatgagcagggtagtgat
ctccctcctcagcgtatcgtctacgtctcctgtaacccgaagactctagccagggacgcg
gatattttgtgtcatcaagcaggctatgttctcaagagtgctggaatcgtcaatatgttc
ccccatacatcccatgtagagtctatggcggtgtttgagagatcaacaaattga
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