Polynucleobacter arcticus: DN92_06850
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Entry
DN92_06850 CDS
T09901
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pard
Polynucleobacter arcticus
Pathway
pard03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pard00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DN92_06850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pard03019
]
DN92_06850
Enzymes [BR:
pard01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DN92_06850
Messenger RNA biogenesis [BR:
pard03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DN92_06850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
Fe-ADH
AAA_22
P-loop_SecA
UvrD-helicase
Cas3-like_C_2
DsrH
Motif
Other DBs
NCBI-ProteinID:
QKM60774
UniProt:
A0A6M9PFD3
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All DBs
Position
1351503..1352819
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AA seq
438 aa
AA seq
DB search
MLFTDLGLSESILRAISEEGYTSPTPIQEKSIPAVLKGGDLLAAAQTGTGKTAGFTLPIL
QRLTTTAKTTGKRQLRVLILTPTRELAAQVQESVVTYGKYTGLKSTVIFGGVGANPQIKA
IAAGLDILVATPGRLLDLMSQNCVSLAHIEILVLDEADRMLDMGFLRDIKKILAALPKQR
QNLLFSATFSTEIKALADGLLNSPALIEVARSNSTNDAIAQLIHPVDRTQKHPLLAHLIK
TNQWQQVLVFTRTKHGANKLVTQLEKDGITAMAIHGNKSQSARTKALAEFKDGKITVLVA
TDIAARGIDIDQLPHVVNYDLPNVSEDYVHRIGRTGRAGSNGVAVSLVCVDEHQMLRDIE
KLIKQKLPQEVIAGFEPDPNAVAQPIQLRSQQHQQSRKPRPAGAGSGGSGGGGGSGGGGG
GGKPAAKRTSPPKRSFNR
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgttatttacagatcttggtttatcagaatccattcttcgcgctattagcgaggaaggc
tataccagccctacccctattcaagaaaaatcaatccctgccgttttaaagggtggcgat
ttacttgctgcagctcaaaccggcaccggcaagaccgctggtttcaccctgccgattctt
cagcgcctaacgactaccgccaagactactggcaagcgtcaattgcgcgtgttgattttg
actcccacccgtgaattggccgctcaagttcaagaatccgtagtcacctatggaaaatat
actggcctcaaatccacggtgatttttggtggtgtcggcgccaacccgcaaattaaagct
attgcagcggggcttgatatcttggtggcaacgcccggccgtttactggacttaatgtct
cagaactgtgtttccctcgctcatattgaaattcttgtgctcgatgaagctgatcgtatg
ctcgatatgggctttttgcgtgacattaaaaagattttggctgcactaccaaagcagcgt
cagaacttactattttccgcaaccttctcaactgagatcaaggctttagccgatggttta
ctaaactctccggcgctaattgaagtggctcgcagtaatagtacaaatgatgcgattgct
caactgatccatccggtagacagaactcagaaacatcccttattggcgcatctgattaaa
accaatcagtggcagcaggtcctggtgtttactcgcactaaacatggcgctaacaaactg
gttacgcaactagaaaaagatggtattacagccatggcgattcatggcaacaagagtcaa
agtgcgcgcactaaagcattggcagagtttaaggatggaaaaattaccgtcttagttgct
actgatattgctgcacgtggtatcgatattgatcagctcccccatgttgtgaactatgac
ctgccaaatgtctcagaggattatgtgcaccgcattggtcgaactggtagagcgggctct
aacggggtcgcagtctctttagtctgcgttgatgaacatcaaatgctcagagatattgaa
aaactcattaagcagaaactacctcaggaagtgattgctggatttgagccagatccaaac
gcagtagcacaacctattcaattacgtagtcagcaacatcagcaatccagaaaacctcgt
ccggctggtgcgggaagtggtggcagtggcggtggtggcggtagtggcggtggtggcggt
ggtggtaagccggcagctaaacgcactagtccacccaagcgtagttttaatcggtaa
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