Polynucleobacter arcticus: DN92_08815
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Entry
DN92_08815 CDS
T09901
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pard
Polynucleobacter arcticus
Brite
KEGG Orthology (KO) [BR:
pard00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DN92_08815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pard03021
]
DN92_08815
Transcription machinery [BR:
pard03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DN92_08815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Ripply
Motif
Other DBs
NCBI-ProteinID:
QKM61118
UniProt:
A0A6M9PP05
LinkDB
All DBs
Position
complement(1729091..1731694)
Genome browser
AA seq
867 aa
AA seq
DB search
MPNTKKKPAKPAAKVPTKASAKAPTKAPAKSVAKPVAKAKTPAKLVVKAKAPVKPIAKAP
VKAVKAAAKPVAKVKAPAKPAAKAKAPVKPAAKAVKAPAKPVAKAKAAVKPVAKAPTKAV
KAPVKVAAKPVAKAPAKPVAKTPIKPAAKPVAKSVVKVEAPKKGKAAAAPKVEVEQVAKE
AKGKKAKTVEVEIEATEEVKKGRKPKADAPAEGAEPVLTDRQKARERKAKEKALLKEFAA
QQLGSEEQQELRRTRLKTLIKMGKSKGYLTHGEMNDVMSDELSDADALETLISLLNDINI
TVYEQAPDAETLLLNENASATTSEEEAEEEAEAALATVDSEFGRTTDPVRMYMREMGTVD
LLTREGEIVIAKKIEAGLKDMVMALAACPVTIGEMLANVDKITSGEMEIDQFVDGLVDPN
AEDIKLGPEEPEVDPDAEVGDEEGGEDEGGGGGGAATANAKQLEELKQISLEKFAIVRTQ
ADKMRRAFDKEGYNCPAYIKAQEAIRGELLGFRLTAKSVEKLCDTMRSQVDQVWKLERGI
VSLLVDKVGVNRGEVLKDFPKMSMNLEWVNKLLKENKPYNALLQRNVPAIQELQQKLIDI
QTRVVLPLPELKEVNKQMIAGEKRAREAKREMTVANLRLVISIAKKYTNRGLQFLDLIQE
GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRIS
RQILQETGHEPDAATLALKMEIPEDKIRKIMKIAKEPISMETPIGDDADSNLGDFIEDSN
TLAPAEAALHDSMRDVVKDVLDSLTPREAKVLRMRFGVEMSTDHTLEEVGKQFDVTRERI
RQIEAKALRKMRHPSRSDKLKTFLEED
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgccaaataccaagaaaaaaccagctaaaccagccgctaaagtgccaactaaagcatca
gccaaggcaccaacgaaggcgccagctaaatcagtcgctaagccagtcgcaaaagcaaag
actcctgccaaactagttgtgaaagcgaaggcaccagttaagccaattgccaaggcgcct
gtcaaagcagtgaaggcagcggctaagccagtcgcaaaagtgaaggctcctgccaaacct
gctgcaaaagcaaaagcaccagttaagccagctgccaaagcggtgaaagcaccagctaag
ccagtcgcaaaagcgaaggcagcggtgaagccggttgcgaaggcacctacaaaagcggta
aaggcgccagtcaaggttgctgcaaagccagttgcaaaggcacctgctaaacctgttgcg
aagactcctatcaagccagctgcaaaaccagtagccaagtcagtggtgaaagttgaggcc
cctaagaaaggtaaagctgctgctgcaccaaaggttgaagtagagcaggttgctaaggaa
gctaagggtaagaaagccaagactgttgaagttgagatagaggccactgaagaagttaaa
aagggccgtaagccaaaagctgatgctcctgctgaaggcgctgaaccagttttaacggat
cgtcaaaaagcccgtgagcgcaaagcaaaagaaaaagcgcttttaaaagaattcgcagca
caacaattgggatctgaagagcaacaagaattgcgtcgtacccgtctgaagactttgatc
aagatgggtaagtccaagggttacttaactcatggcgaaatgaatgacgtgatgtcggat
gaattgtctgatgctgatgcattagaaacgctgattagccttctaaatgacatcaacatt
actgtttacgagcaagctcctgatgctgaaacgctcttgctcaatgagaatgcttcagca
accacttctgaagaagaagcggaagaagaggctgaagccgctttagctactgtcgactct
gaatttgggcgtacaaccgacccagtgcgtatgtatatgcgtgagatgggcactgtggat
ttgctgacacgcgaaggcgagatcgtcattgcgaagaagatcgaagcaggccttaaagat
atggtgatggcattggctgcttgccccgtcacgattggcgaaatgcttgctaacgtcgat
aagattaccagcggcgagatggagattgatcaattcgtagatggattagttgatccaaat
gccgaagatattaagcttgggccagaagagccagaagttgacccagatgcagaagtgggt
gatgaagaaggcggcgaagacgaaggcggcggcggtggcggtgcagctacagcaaacgct
aagcaattagaagagttaaagcaaatctccctggagaagtttgcgattgtgcgtacgcag
gctgacaagatgcgccgtgcttttgataaagagggctataactgcccagcctatatcaag
gcgcaagaagcgattcgtggtgagctactcggtttccgtctgaccgcaaagagtgttgag
aagttgtgcgacaccatgcgatcacaagtagaccaagtatggaaactcgagcgcggtatt
gtgagcttgttagtggataaggtcggcgtgaatcgtggtgaagtattaaaagacttccca
aagatgtcgatgaatctagagtgggtaaataagctactgaaagaaaacaagccttataac
gcactcctacaacgtaatgttccagcgattcaagaacttcagcagaagttgattgatatt
caaactcgcgttgtattaccgttgccagaattaaaagaagtaaataagcaaatgattgcc
ggcgagaagcgtgcacgtgaagcaaagcgtgagatgacagtagccaacttacgtttggtt
atttcgattgcgaagaaatacaccaaccgtggtttgcagttcttggatttaattcaagaa
ggtaatatcggtttgatgaaggcggttgataagtttgaataccgtcgtggttataagttc
tctacttatgcaacttggtggatccgtcaggcaattacccgttccattgctgaccaagca
cgtacgatccgtatcccagtgcatatgattgagacgatcaataagatgaatcgtatcagc
cgtcaaatcttgcaagaaactggtcatgagccagatgcagcaaccttggctctcaagatg
gaaattcctgaggacaagattcgcaagatcatgaagattgctaaagagccaatctccatg
gaaacgccgattggtgatgatgcagactcgaatttgggtgacttcattgaggacagcaat
actttagctccggctgaagcagcgttgcatgactccatgcgcgatgtggtcaaggatgta
ttggattcattaacaccgcgtgaggcaaaggtattacgtatgcgctttggtgttgagatg
agtacagaccataccctcgaagaagtaggtaagcagtttgatgtcacgcgtgagcgtatt
cgtcagattgaagccaaggctttgagaaagatgcgtcatccaagtcgcagcgacaaactc
aagaccttcctcgaagaggattga
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