Pyrofollis japonicus: PYJP_18340
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Entry
PYJP_18340 CDS
T09484
Symbol
rrp42
Name
(GenBank) exosome complex protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
pare
Pyrofollis japonicus
Pathway
pare03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pare00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PYJP_18340 (rrp42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pare03019
]
PYJP_18340 (rrp42)
Messenger RNA biogenesis [BR:
pare03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PYJP_18340 (rrp42)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
PYJP_18340 (rrp42)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Mutator
Motif
Other DBs
NCBI-ProteinID:
BEP18482
LinkDB
All DBs
Position
complement(1779688..1780695)
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AA seq
335 aa
AA seq
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MSVTPSFQPVMPKLKRYTLETLLSRGVRLDGRRLDEIRKIEIVPGYVEKAEGSALVRLGQ
TVVLAGVKTDIVAPFPDTPNEGVLVVHAEFVPLASPTFEPGPPDENAIELARVIDRSLRE
IRAVALDKLVIEPGKHVWRIYVDIYVLNHDGNLFDASMLATMAALMATRLPAPVKVEDGY
RVDRTKYTMLLPINHKVVSVTLAKISGKLLVDPTYEEEQVADTRLVVAVSDDGRIAGMQK
TGMGDLTYKEVLTAVSIALNRANVYLEELSRVMEPYREKLAKELEEVKEESAEAKEQQIV
AEPAPRKERLEEEVIEQGELAEEESGTSTEEAERE
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttactccgtcatttcagcccgttatgcctaagcttaagaggtatacacttgaa
acgctgttatcacgaggggtaagactagacggtaggagactcgacgagataagaaagata
gagatagtccctggctacgtcgagaaggctgagggctcggcgcttgtccggctaggccag
acagtagtacttgcaggagtcaagaccgatatcgttgcacctttcccggatacgccaaac
gagggagtcctcgtagtacatgctgagttcgtccctctagcttcgcctacgtttgagccg
gggccgccagatgagaacgctatagagcttgcaagagttattgatagaagtctccgagaa
atacgggcagtagctctcgataagcttgttatcgagcccggaaaacacgtatggcgaata
tatgttgacatatatgtactaaaccacgacgggaacttgtttgacgcatcaatgttggca
acaatggccgctctcatggctacgaggctcccagcgcccgttaaggtcgaagacgggtac
cgagttgaccgcacaaagtacacaatgctcctacccataaaccacaaggtagtttcagtt
accttggcgaagatttctggtaaactactagttgacccgacttacgaggaagaacaagtc
gccgatacgaggctagtagtagccgtctccgatgatggaaggatagctggtatgcagaag
acaggaatgggtgacctcacctacaaggaggtcctaacagcagtctcgatagcccttaac
cgtgcgaatgtgtacctagaggagcttagcagagttatggagccgtatagggagaaactc
gcaaaggagcttgaggaggtaaaggaagagagtgccgaggcgaaagagcaacaaattgtt
gcggaaccagctcctcgaaaagaacgtcttgaggaagaagtaatagagcagggagaactt
gcagaggaggaatccggtacaagcaccgaggaagccgagagagaataa
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