Pyrofollis japonicus: PYJP_18350
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Entry
PYJP_18350 CDS
T09484
Symbol
rrp41
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
pare
Pyrofollis japonicus
Pathway
pare03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pare00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PYJP_18350 (rrp41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pare03019
]
PYJP_18350 (rrp41)
Messenger RNA biogenesis [BR:
pare03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PYJP_18350 (rrp41)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
PYJP_18350 (rrp41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
BEP18483
LinkDB
All DBs
Position
complement(1780702..1781463)
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AA seq
253 aa
AA seq
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MGGTGGEKPVLIRWEEKDGQKLPIRIDGRLPEQLRPIRIEVGVLGNADGSALVEYGATRV
LAAVYGPREAHPRHMALPDRAIIRCRYHMAPFSTEERKTPAPTRREVELSKVIREALESV
VITEMYPRTSIDVYMEVLQSDGGTRTAAITAASLALADAGIAMRDLVAGVAVGKVDGVLV
LDINEIEDNYAEADMPVAMAPSLDKVLLLQLNGVLSHEEFIKALELARKGILEIYRLQKE
ALRKKYVEVQSSG
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atgggcggtacgggaggcgagaagccagtactcataagatgggaagaaaaagatgggcaa
aagctgccaataaggattgatggacgactaccagagcagcttaggcctataaggatagag
gtaggcgtcctcggcaacgctgatggatcagctcttgtagagtatggtgcgacaagagtg
ctggcagcggtatatgggcctcgcgaggctcatccaaggcatatggcgcttcctgatagg
gccataatacggtgtcgctaccacatggccccgttctcgaccgaggagagaaagacacct
gccccaactaggagagaggtagagctttccaaggttattcgggaggctcttgaatcagta
gttattacggagatgtatccgcgtacctcgatagacgtgtatatggaggttcttcagtca
gatggagggacgagaacagcggctataactgctgcaagcctcgcattagctgatgcaggt
attgctatgcgtgacttagtagccggtgtagccgttggcaaagttgacggcgtactcgta
ctagacataaacgagattgaggacaactatgcggaggcagacatgccggtggctatggct
ccgagcctcgacaaggtactcttgctccagcttaacggcgtcttgagccacgaggagttt
attaaagcacttgagctagcacgtaagggaatactcgaaatttataggcttcagaaggaa
gctcttcgcaaaaagtatgtagaagttcagtcctcgggttga
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