Pyrofollis japonicus: PYJP_18360
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Entry
PYJP_18360 CDS
T09484
Symbol
rrp4
Name
(GenBank) exosome complex RNA-binding protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
pare
Pyrofollis japonicus
Pathway
pare03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pare00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PYJP_18360 (rrp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pare03019
]
PYJP_18360 (rrp4)
Messenger RNA biogenesis [BR:
pare03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PYJP_18360 (rrp4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
PYJP_18360 (rrp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_1
RRP4_S1
KH_6
RRP40_S1
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
BEP18484
LinkDB
All DBs
Position
complement(1781465..1782184)
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AA seq
239 aa
AA seq
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MAKIYVSPRSIVVPGDLIAEGDDVEADSVYIERRGKRFYATITGLVSVEQVDDKYKISII
PLEGAYIPKAGDIVIGLVEDIGLTHWEVDISSPYKGILTVQEALEKPFNPVTDSLKRYLD
VGDYIVAKVIAFDRARDPLLTIKGKGLGRVTEGSIVEIKPSRVARVIGKKGSMVNMLMQE
TGCNILVGQNGRILINCPNKDIEEILVLSIKKIEAEAHTTGLTERVREFIRKEREKRGV
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaagatatatgttagtccgcgatcaatagtggttccaggagacctaatagctgaa
ggcgatgacgtagaggctgactcggtctatatcgagaggagaggaaagcgcttttatgca
acaataactgggcttgttagcgtagagcaagtagacgataagtacaagatatcaataata
cctctcgagggagcctacataccgaaagccggtgacatagtaatcgggctagtggaggat
ataggtctgacacactgggaagtagatatatcgtcaccgtataagggaatattgactgtg
caagaggcgctagagaaaccattcaacccggtaactgatagtctaaaacgttatcttgat
gtaggtgactacatcgtagcaaaagtaatagccttcgaccgggcacgtgatcctctactc
acgataaagggcaagggtcttgggcgagtaaccgagggctcaatcgtcgagataaagcca
agcagagttgcaagagttattggtaagaagggctccatggtaaacatgttgatgcaagaa
acagggtgcaatatactcgtcgggcaaaacgggagaatactgataaattgcccgaataaa
gatattgaggagatacttgtcttgtcgattaagaaaatagaagcagaagcacatacaaca
ggcctaacagagagagtaagggagtttatccgcaaagagagggagaagagaggggtctaa
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