KEGG   Pyrofollis japonicus: PYJP_19950
Entry
PYJP_19950        CDS       T09484                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pare  Pyrofollis japonicus
Pathway
pare03030  DNA replication
pare03410  Base excision repair
pare03420  Nucleotide excision repair
pare03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pare00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PYJP_19950
   03410 Base excision repair
    PYJP_19950
   03420 Nucleotide excision repair
    PYJP_19950
   03430 Mismatch repair
    PYJP_19950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pare03032]
    PYJP_19950
   03400 DNA repair and recombination proteins [BR:pare03400]
    PYJP_19950
Enzymes [BR:pare01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PYJP_19950
    6.5.1.6  DNA ligase (ATP or NAD+)
     PYJP_19950
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PYJP_19950
DNA replication proteins [BR:pare03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    PYJP_19950
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     PYJP_19950
DNA repair and recombination proteins [BR:pare03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PYJP_19950
   NER (nucleotide excision repair)
    Other NER factors
     PYJP_19950
   MMR (mismatch excision repair)
    Other MMR factors
     PYJP_19950
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 PQQ_2
Other DBs
NCBI-ProteinID: BEP18643
LinkDB
Position
1928622..1930445
AA seq 607 aa
MPMSFSILAETFEKLERVTARTQMLLYLVELFKKTPPDVIDKVVYILQGKLWPDWKGLPE
LGVGEKLLIKAASIALQVSEQELEQLAKKLGDIGLAIEKIKQQKAQKQQAVGLLAYIKKP
SGAEGLTVERVYDTLAKIAMAQGEGSRDIKLKLLAGLLAEASPKEAKYIARFVEGRLRLG
VGDATIMEALAVVYGGSAAMRNIIERAYNLRADLGMIAKILATQGIEALKNIKPEVGIPI
RPMLAERLNDPAEILKKLGGRALVEYKYDGERAQIHKKGDKIWIFSRRLENITHMYPDVV
EMAKKWIKANEAIVEGEIVAIDPETGELRPFQVLMRRRRKHDIHLYLSEIPVAVFLFECV
YANGEDLTMKPLPRRRETLEKIIEQQETWRLAEGIVTNSAEELEKFFLKAIEDGAEGVMA
KAIHEKSIYQAGARGWLWIKYKRDYKSEMTDTVDLVVIGAFYGRGRRGGKFGALLMAAYD
PDSDTFKSVCKVGSGFTDEDLERLDDMLKPYIRDRKPARVDSQMKPDVWVEPALVAEVIG
AELTLSPIHTCCYGWVKPGAGISIRFPRFVRWRPDKGPEDATTTKELYEMYKRQLRRIKE
EQTAEQA
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgcctatgagtttctctatacttgctgagacgtttgaaaagcttgaaagagttactgct
aggacacagatgctcctctacctcgtcgagttgtttaagaagacgcctcccgacgtgata
gacaaagttgtctatattcttcaaggaaagctttggccagactggaaaggattacccgag
ctcggcgtgggcgagaagctcctcataaaggccgcatcaatagctctccaagtatctgag
caggagcttgagcagctcgcaaagaagctcggcgatataggcttagctattgagaaaata
aagcagcaaaaagcgcagaaacagcaagccgtcggcctacttgcctatataaagaaacct
agtggcgcagaagggctcaccgttgagcgcgtctatgacacattagctaaaatagccatg
gcacagggcgagggaagtagggatatcaagctcaaactccttgctggcctcttagcagaa
gcttctcccaaagaagcaaaatacattgctcgcttcgttgagggccgtctccgcctcggg
gtcggcgacgccaccatcatggaagccctcgcagtagtatatggtggaagcgcggccatg
agaaacatcatagagcgtgcatataatctccgagcagacctaggaatgattgcaaagata
cttgctacacagggaatagaggccttaaagaacataaagcctgaagtcgggataccaatt
aggccgatgcttgctgagcgcttgaatgatccagcagagatactcaagaagctgggagga
cgagcactagtagagtacaagtatgacggagaacgcgcccagatccacaagaagggagac
aagatatggatattctctcgtaggctagagaacattacccacatgtatcccgacgttgtc
gagatggctaagaaatggattaaggcaaacgaggcaattgtagaaggagagatagttgca
atagaccctgagacaggtgagctaagacccttccaggtactaatgagaagaagacgtaaa
cacgacatacacttatacctttcagagatacctgtggcagtattcttattcgagtgtgta
tacgctaatggcgaagacttgacaatgaaacctctacccagacgccgagaaaccctcgag
aagataatagagcagcaagagacctggcgcctagcagaaggcattgtgacaaatagtgca
gaggagcttgaaaagttcttcctcaaagccatagaggatggcgcagaaggtgttatggcg
aaagcgatacacgagaagagcatataccaggcaggtgcacgcggctggctatggataaag
tacaagcgtgactacaagtcagaaatgacggacaccgttgacctagtagtgattggtgca
ttctatggacgaggacgccgcgggggcaaatttggtgcactccttatggctgcctatgac
ccagattcggacacgttcaagagcgtgtgcaaggttggcagcggcttcactgatgaggac
cttgagcgcctggacgatatgcttaagccgtatattcgtgaccgcaaaccggctagagtt
gatagccagatgaagcctgatgtatgggttgagccggcattagtggctgaagtcataggc
gcagagttaacgctgagtccaatacacacttgttgctatggatgggtaaagccaggcgct
gggatatcgatacggttcccaaggttcgtgcgctggaggccagataaaggccctgaagac
gcaaccacgaccaaggaactctacgagatgtacaagaggcaacttcgcagaataaaggag
gaacaaacggctgagcaagcatag

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