Parageobacillus sp. KH3-4: PspKH34_01010
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Entry
PspKH34_01010 CDS
T08468
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
parg
Parageobacillus sp. KH3-4
Pathway
parg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
parg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PspKH34_01010 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
parg03021
]
PspKH34_01010 (rpoC)
03400 DNA repair and recombination proteins [BR:
parg03400
]
PspKH34_01010 (rpoC)
Enzymes [BR:
parg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PspKH34_01010 (rpoC)
Transcription machinery [BR:
parg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PspKH34_01010 (rpoC)
DNA repair and recombination proteins [BR:
parg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PspKH34_01010 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BDG45540
LinkDB
All DBs
Position
121707..125306
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNKFEYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRAYREKYGQSFQASMGAEAIKKLLQ
DIDLEKEVATLKEELKTAQGQRRARIIKRLEVLEAFRNSGNDPAWMVLDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVERGLAHNIKSAKRKIERVHPEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEREGAIGEGMVFKDTDEALLAYHNGYVHLHSRIAVH
AGSLKNETFTEEQNNKLLITTVGKLIFNEILPNSFPYINEPTTENIEGRTPDKYFLDKGA
NVKEEIRKRELVPPFKKKVLGQIIAEVFKRFKITETSKMLDRMKDLGFQYSTKAGITIGV
ADIVVLPEKQEILEEAQAKVDTVLKQFRRGLITDEERYERVISIWSAAKDKIQDRLMKSL
DKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGILARALTDGTEVIVKLE
ERLVGRYAQKTVRHPETGEILVRKDEMITEDIANAIIKAGIKEVWIRSAFTCNTRHGVCK
KCYGRNLATGAEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQELF
EARNPKGQAVISEIDGIVTSISETRDRQYEIVVKGEVETRSYIAPYNARLKVEEGQQVER
GQELTEGSIDPKQLLKVRDITSVQEYLLREVQKVYRMQGVEISDKHIEVMVRQMLRKVRI
IDAGDTDVLPGTLLDVHQFTDVNEKALLEGKRPATARPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMTRYRKVKPVVKKEENEDAVTSK
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtaaataaatttgaatacatgaaaatcggactcgcttctccggaaaaaatt
cgttcttggtcgtatggtgaagtaaaaaaaccggaaacgattaactatcgtacgttgaag
ccggaaaaagacggattgttttgcgagcgtattttcggaccaacaaaagactgggaatgt
cattgtggaaaatataagcgcgtacgttataaaggtgttgtctgtgaccgttgcggtgtc
gaagtgactcgttcgaaagtccgtcgcgaacggatgggacatattgaactagcagctcct
gtttcacatatttggtatttcaaagggattccaagccgtatggggcttgttttggacatg
tcgccgcgtgcgttagaagaagtcatttatttcgcttcatatgttgtgactgatccaggc
gatacaccgcttgagaaaaaacaactgctttctgaaaaagaatatcgcgcgtatcgcgaa
aaatacgggcaatcgttccaagcttccatgggtgccgaagccattaaaaagcttcttcaa
gatattgatttagaaaaagaagtggcaacgctaaaagaagaattaaaaacagcgcaagga
cagcggcgtgcccgcattattaaacggttggaagtattagaagcgttccgtaattcaggg
aacgaccctgcttggatggtgcttgacgtgcttccagtcatcccgcctgaattgcggccg
atggtgcaattagatggtggacgttttgcaacatccgatctcaatgacttatatcgccgt
gttattaaccgcaacaatcggttaaaacggctgttagatctcggtgcgccaagcattatt
gtgcaaaacgaaaaacggatgctccaagaagcggtcgacgcgctcattgacaacggtcga
cgcggtcgtccggtaacggggcctgggaaccgtccgctaaaatcgctgtcccatatgcta
aaaggaaagcaaggacgtttccggcaaaacttgcttggtaagcgtgtggattattcaggc
cggtcggttattgttgtcggtccgaacttgaaaatgtatcaatgcggtttgccaaaagaa
atggcgctcgagctctttaaaccatttgtgatgaaagaacttgtggaacgtggtctagcc
cacaacattaaaagtgcaaaacggaaaattgaacgcgtccatccggaagtatgggatgta
ttagaggatgtcattaaggaacatcctgttttgctcaaccgcgcgccaactcttcaccga
ttgggcattcaagcgttcgagccaacgcttgtcgaaggacgcgccatccgtttgcatccg
cttgtatgtacggcatataacgctgactttgatggagaccaaatggcggtgcacgttcca
ttatccgcggaagcgcaggcagaagcgcgcttgcttatgctggctgcacaaaacattttg
aacccgaaagatggaaaaccggttgttactccttcgcaagacatggttttaggtaactac
tatttaacgatggaacgcgaaggggcgatcggtgaaggaatggtatttaaagatacggat
gaagcgctgctcgcgtaccataatggttatgtccatttgcactcgcgaattgccgttcat
gctggctcattgaaaaatgaaacgtttacagaagagcaaaataataaactgcttattaca
acagttggaaaactcattttcaatgaaattttgccaaactcattcccgtatattaacgaa
ccgacaaccgaaaatatcgaaggacggacaccagataaatatttccttgataaaggcgcg
aatgtcaaagaagaaattcgcaagcgcgaacttgttccgccatttaagaaaaaagtgctt
ggacaaattatcgctgaagtatttaagcggttcaaaattacggaaacatcgaaaatgctg
gaccgcatgaaagatttaggtttccaatattcgacgaaagccggcattacgattggcgtt
gccgacattgtcgtgctgccggaaaaacaagaaattcttgaagaagcgcaagcgaaagtc
gacacggtgttaaaacaattccgccgcggtttaattaccgacgaagagcgctatgaacgg
gttatttcgatttggagcgcggcgaaagataaaattcaggacagattgatgaaatcgctg
gataaacgcaatccaatctttatgatgagcgattctggagcccgtggtaacgcgtcgaac
tttacgcagcttgccggaatgcgcggtcttatggcgaacccggcaggacgcatcatcgag
ttgccgatcaaatcttcgttccgtgaaggattaaccgtattggagtactttatttctaca
cacggggcgcgcaaagggcttgccgatactgctttgaaaacagcggactctggttatctc
acaagacgtcttgttgacgtggcgcaagatgtgattgttcgcgaagaagattgcggcacg
gaccgcggtattcttgcaagagcattgacggacggtacggaagtcatcgttaagctagaa
gaacgtcttgtcggccgttacgcgcaaaaaacagtgagacacccagaaacgggtgaaata
ctcgttcgcaaagatgagatgatcacagaagatattgctaacgcgatcattaaagcaggc
attaaagaagtatggatccgctctgcctttacatgcaatacgcgacacggtgtatgtaaa
aaatgttacggtcgcaacttggcaaccggtgcggaagtggaagtcggtgaagcagtcggc
attattgccgcgcaatcgatcggtgagccgggtacgcagctaacgatgcgcacgttccac
acaggcggtgttgctggcgacgacattacccaaggtttgccgcgtgttcaagagctgttt
gaagcgcgtaatccgaaagggcaggcggtgatttcggagattgacggaatcgtcacttcg
attagcgaaacgcgcgaccgccaatacgaaatcgtcgtaaaaggcgaagtggaaacacgt
tcttatatcgccccttacaacgccagattaaaagtagaagaagggcagcaagtagagcgt
gggcaagaactgacagaagggtcgattgatccgaaacaattattaaaagtaagagatatt
acatccgtgcaagaatacttattgcgtgaagtacaaaaagtgtacagaatgcaaggggta
gaaattagcgacaaacatatcgaagtaatggttcgacaaatgcttcgcaaagtgcgcatc
attgacgcaggagatacagacgtcttgcctggcacgttattagatgtgcatcaatttaca
gatgtgaacgaaaaagcgcttcttgaaggaaaacgcccggcgacggctcgtccggtattg
cttggtattacaaaagcatcgcttgagacagattcgttcttgtcagctgcatctttccaa
gaaacaacgcgcgttttaacagatgcggcgatcaaaggaaaacgagatgaattgcttggc
ttaaaagaaaacgtcattatcggtaagcttgttcctgcaggaactggaatgactcgctac
cgcaaagtaaagccggtagtgaagaaagaagaaaatgaggatgcggttacttctaaataa
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