Parageobacillus sp. KH3-4: PspKH34_07300
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Entry
PspKH34_07300 CDS
T08468
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
parg
Parageobacillus sp. KH3-4
Pathway
parg03030
DNA replication
parg03430
Mismatch repair
parg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
parg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PspKH34_07300 (dnaE)
03430 Mismatch repair
PspKH34_07300 (dnaE)
03440 Homologous recombination
PspKH34_07300 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
parg03032
]
PspKH34_07300 (dnaE)
03400 DNA repair and recombination proteins [BR:
parg03400
]
PspKH34_07300 (dnaE)
Enzymes [BR:
parg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PspKH34_07300 (dnaE)
DNA replication proteins [BR:
parg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PspKH34_07300 (dnaE)
DNA repair and recombination proteins [BR:
parg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PspKH34_07300 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HIN
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
BDG46169
LinkDB
All DBs
Position
766127..769438
Genome browser
AA seq
1103 aa
AA seq
DB search
MSFVHLHVRSCYSLLTSPAKISDLVKKAKDLQFPALALTDENVLYGAIPFYMECKRYGIQ
PIIGMITDVVLEGEEAHPLVLLAKNETGYQHLMKISSTIQTKTREGIPEKWLWHYRDGLI
ALTPGKSGQIEILLAHGEITKAKQVLERYKQIFEANFYLSVQRGKNKEKEPYEQQLIVLG
EETNTPLVATNDVQYIEKEDAFVHRCLLAIKQGTVIEKETATAGERYLTSPEEMKERFSD
LPAAVENSGKIAEQCRLDIDFGSLKLPKYPVPTKESADDYLRRLCMEGLRERVLSPSDRY
IERLEYELNVIRQMGFSDYFLIVWDFMNFARKQGIITGPGRGSAAGSLVAYTLYITNVDP
IQYGLLFERFLNPERVSMPDIDIDFPDERREEVIQYVANKYGQQYVAQIITFGTFGAKAA
LRDIGKVLQIDAKEMESILKHVPNKPGITIQEAYDQSAAFRQAVQSSALMKRWVVTAMKV
EGLPRHTSTHAAGVIISSEPLSQIVPLQQGHGELYLTQYPMDVLERLGLLKMDFLGLRTL
TLLEHICRLIQQQTGKTIDVREIPLHDRKTYELVSEGDTNGIFQLESDGMKRVLKQLKPS
QFEDIVAVNALYRPGPIDYIPSYIRRKHGEEKASYLHPNLEPILAPTYGVLIYQEQIMQI
AANIAGFSLGKADLLRRAIAKKKKEILDQQRNAFVRGCMEKGYDESFANDLYDMIVRFVN
YGFNRSHAVAYSMLSYQLAYLKAHYPLYFYAALLTSAIGDEEKVALYIYEARQKRIELLP
PSVNQSRYSFSVEHGKIRYSLAAVKHVGAAAVKAIVQERKKGPFSDFFDFCVRLFGKGIN
RKTIESLILSGCFDEFGVERASLLASMDVALEHAQLVGPYVEEGLFSDISLKPKYVEAPA
FPLEEKLMYEKELLGVYVSPHPISAHRKMFRLAGAQPVMSIIREKTDRPVKAGVYIVQER
KTRTKKGEEMSFFTISDESGEMDAVAFPDVYRRYASVLKKGEVQLLEGKVEIRAGKPQFV
IRKVLAPAFASLYVKIDPEQIATGTLFALKELLQKHHGNTPVFLYYEQEQKMVKLSEEYD
VELTDECIAALKALLGDDHIVVK
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgtttgttcaccttcacgttcgcagctgctatagcttgttaacaagcccagcgaaa
attagcgatttagttaaaaaggcgaaagatttgcaatttcccgcgttagcattaacggat
gaaaacgtattgtacggagcgattcccttttacatggaatgtaaacgttacggcattcag
ccgattattgggatgatcacggatgttgtgcttgaaggagaagaggcacatccgctcgtt
ttattagcaaaaaatgaaacaggctaccaacatttaatgaaaatcagcagtacgattcaa
acgaaaacacgcgaaggaattccggaaaaatggttatggcattatcgcgatggattaatt
gcgctaaccccgggaaaaagcgggcaaattgaaatattgctcgctcatggcgaaataaca
aaagcaaagcaagtattagaacggtataagcaaatttttgaggcgaacttttacctttcc
gtgcagcgtgggaaaaataaggagaaagagccgtatgaacagcaactgattgttttaggc
gaagaaacgaatacaccgcttgtagcgacgaatgacgttcaatatatcgaaaaagaagac
gcgtttgtgcaccgctgtttattggcgatcaaacaggggactgtgattgaaaaagaaaca
gcgacagcgggagagcggtatttaacatcgccagaagaaatgaaggagcggttttccgat
ttgcccgcggcggtggaaaacagcgggaaaatcgctgaacaatgccgccttgacattgat
tttggttcgttaaagctgccgaaatatcccgtgccgacgaaagaaagcgctgacgattat
ttgcgccgcctttgcatggaagggctgcgagaacgggtgctttccccttctgaccgctac
atagaacggctagaatatgaactgaatgtcattcggcaaatggggttcagtgactatttt
ttgatcgtttgggattttatgaatttcgccagaaaacaagggattatcacagggcctggg
cgaggatcggcggcaggatcgcttgtcgcgtacacgctttacattacaaacgtcgatccg
attcaatacggccttttattcgagcggtttttaaatccagagcgtgtgtcgatgccggat
atcgatattgattttcccgatgaacggcgcgaagaagtcattcaatatgtcgccaataag
tacggacaacaatatgtggcgcaaatcattacgttcggcacgttcggcgccaaggcggcc
ctgcgcgacattggaaaagtgctgcagatcgatgcgaaagagatggaaagtatcctaaag
catgttcctaacaagcccggaatcacgattcaagaagcatatgatcaatcggctgctttt
cgccaagcggttcagtcttccgcattgatgaaacgatgggttgtcacggcaatgaaagtg
gaaggacttccgcgccacacctcgacgcacgcagccggtgtaatcattagcagcgagccg
ctttcgcaaatcgttccattgcaacaagggcatggcgaattgtatttaacgcaatatccg
atggatgtgttggagcggctcggtctattaaagatggattttcttggattgcgcacgtta
acattgcttgaacatatatgccgccttattcagcagcaaacgggcaaaacgatcgatgtg
cgggagatcccgcttcatgaccgcaaaacgtatgaattagtaagcgagggagacacaaac
gggatttttcagttagagtccgatggaatgaagcgtgtgctaaagcagctaaagccgtcg
caattcgaggatatcgtggcggtgaacgcgctataccggccgggcccgatcgattacatc
ccttcgtatataagaagaaagcacggagaagaaaaagcttcttaccttcatccaaatttg
gagccgattttagcgccgacgtatggagtccttatttatcaagagcaaattatgcaaatc
gccgccaatatcgcgggattttcgctaggcaaagcagatttgttgcggcgggcgattgcg
aaaaagaaaaaagaaattttggatcaacagcggaatgcgtttgtaaggggatgtatggaa
aaaggttatgacgaatcgtttgccaacgatttgtatgatatgatcgttcgctttgtcaac
tacggatttaaccgaagccatgccgtcgcttatagcatgctttcttaccagcttgcttat
ttgaaagcacattaccctctttatttctacgcggcgctgttaacgagcgcgatcggcgac
gaggaaaaagtggctttgtatatttatgaagcaaggcaaaagcggatcgagttgctgccg
ccttccgttaatcaaagccgctattctttttcggtcgagcacggaaagatccgctacagc
ttggctgcagttaaacacgttggggcagcggcggtgaaagcaattgtacaagagcgaaaa
aaagggcctttctccgacttttttgatttttgtgtccgtttatttggaaaaggcatcaac
cgaaaaacgatagaatctttgattttgtccggctgctttgatgaatttggcgtcgaacga
gcgtcgctgttggcgagcatggatgtcgctttagagcatgcgcagcttgtcggcccgtat
gtcgaagaggggttattttccgatatatcgctgaagccgaaatatgttgaagcgcctgct
tttccgctggaagaaaagttaatgtacgaaaaagaactgctcggcgtttatgtttctccg
catccaatatctgcccatcggaaaatgtttcgcttggcgggagcgcagccggtgatgagc
ataataagagaaaaaacggaccgccctgttaaagccggagtgtatattgttcaagagaga
aagacccgaacgaaaaaaggagaggaaatgtcatttttcacgattagcgatgaaagcggg
gaaatggacgcggtcgcgtttccagatgtatatcgccgttatgcttccgttttaaaaaaa
ggagaagtgcaattattggaagggaaggtagagattcgtgcaggaaagccacaattcgtc
attcgcaaagtgctggctcccgcgttcgcgtcgctttacgtaaaaattgatccggagcag
atcgccactggaacattatttgcgttaaaagagttattgcaaaagcatcacggaaacact
cctgtgtttctatattacgaacaagaacaaaagatggtgaagctttcggaagagtatgat
gttgaattgacggatgagtgcattgccgcgttgaaagcgctgctcggcgatgatcatatt
gtagtaaaatga
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