Parageobacillus sp. KH3-4: PspKH34_10530
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Entry
PspKH34_10530 CDS
T08468
Symbol
deaD
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshB
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
parg
Parageobacillus sp. KH3-4
Brite
KEGG Orthology (KO) [BR:
parg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parg03019
]
PspKH34_10530 (deaD)
03009 Ribosome biogenesis [BR:
parg03009
]
PspKH34_10530 (deaD)
Enzymes [BR:
parg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PspKH34_10530 (deaD)
Messenger RNA biogenesis [BR:
parg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PspKH34_10530 (deaD)
Ribosome biogenesis [BR:
parg03009
]
Prokaryotic type
rRNA helicases
PspKH34_10530 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CP_ATPgrasp_2
CMS1
DUF7117
Motif
Other DBs
NCBI-ProteinID:
BDG46492
LinkDB
All DBs
Position
1074670..1075965
Genome browser
AA seq
431 aa
AA seq
DB search
MKETLFERFSFQPFIIEAIKALRFYKPTEIQERIIPIALRGESVIGQSQTGTGKTHAYLL
PIIEKIDPDRKVVQAVITAPTRELATQIYHEILKITKFCPSDRQITARCFIGGTDKQKAI
EKLKTQPHIVVGTPGRINDLIREQALLVRTASTLVVDEADLMLDMGFIVDVDQIAARMPK
ELQMLVFSATIPEKLKPFLKKYMENPKYVHVAPKQVAAEKIEHVLVPLRSRDKVKLLHEM
LVAYNPYLAIVFTNTKKMADEVADKLIEKGMKVGILHGDLSPRERKKMMKQIRDLEFQYI
VATDLAARGIDIEGVSHVINYELPKDLQFYIHRVGRTARAGYTGIAATIYEPSDQDAITK
LEKMGIAFLHRDLIRGEWVDLPPWNRRSKRAKQDGEIAQLLEKVKKAKQVKPGYKKKLLA
ELAKQKKRQRR
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagacgttgtttgagcgattttcatttcagccatttattattgaagcgatcaag
gcgcttcgtttttataaaccaacggaaattcaagagagaattattcccatcgctcttcgc
ggggaaagcgtgatcggccagtcgcaaacaggaacgggaaaaacgcacgcctatttgctg
ccgatcatagaaaaaattgatccggatcgcaaagtagtgcaagcggttattaccgcgccg
acacgggaacttgcgacgcaaatttaccatgaaattttaaaaattacaaagttttgtccg
agcgatcggcaaattacggctcgctgctttatcggcggaaccgataagcaaaaggcgatc
gaaaaattgaagacgcagccgcatatcgtagtcggaaccccaggacgaattaacgacctc
attcgcgaacaggcgctgctcgttcgtacggcaagtacgctcgtcgtcgacgaagcggac
ttaatgttggatatgggatttattgtcgacgtcgaccaaattgctgcacgcatgccgaaa
gaactgcaaatgctcgtgttttccgcgacgattccggagaagttaaagccgtttttgaaa
aaatatatggaaaacccaaaatatgtccacgttgcgccgaagcaagtggcggcggaaaaa
attgagcatgttcttgtgccgcttcgcagccgggacaaagtgaagttgttgcatgaaatg
ttggttgcgtataatccgtatttagcgatcgtatttaccaatacaaaaaagatggccgat
gaagtggcggacaagctgattgaaaaagggatgaaagtcgggattttacacggcgattta
tcgccgcgcgagcgaaagaagatgatgaagcaaattcgcgatctagaatttcaatatatt
gttgctaccgatttggccgcccgcggcattgatattgaaggggtaagccatgtcattaac
tatgaattgccaaaagatttgcagttttacattcatcgcgtcggacgcaccgcgcgcgcc
ggttacacgggaattgcggcgacaatttatgagccgtcggatcaagatgcaatcaccaaa
ttagaaaaaatggggattgcgtttcttcatcgcgatctcatccgcggagaatgggtggat
ttgccgccttggaatcggcgcagcaagcgggcaaagcaagatggggaaatagcgcagctt
cttgagaaagtaaaaaaagcgaaacaagtcaagccgggctataagaaaaaactgcttgct
gaattggcaaaacaaaaaaagcggcagcggcgctaa
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