Parageobacillus sp. KH3-4: PspKH34_26230
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Entry
PspKH34_26230 CDS
T08468
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
parg
Parageobacillus sp. KH3-4
Brite
KEGG Orthology (KO) [BR:
parg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
parg03032
]
PspKH34_26230 (topA)
03400 DNA repair and recombination proteins [BR:
parg03400
]
PspKH34_26230 (topA)
Enzymes [BR:
parg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PspKH34_26230 (topA)
DNA replication proteins [BR:
parg03032
]
Prokaryotic type
DNA Topoisomerases
PspKH34_26230 (topA)
DNA repair and recombination proteins [BR:
parg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PspKH34_26230 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Toprim_2
Auto_anti-p27
zf_Rg
Motif
Other DBs
NCBI-ProteinID:
BDG48062
LinkDB
All DBs
Position
complement(2639583..2641658)
Genome browser
AA seq
691 aa
AA seq
DB search
MSDYLVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDINNGYEPKYITIRGK
GQIIKELKTAAKKAKKVFLAADPDREGEAIAWHLANMLDLDIHSDCRVVFNEITKDAVKE
SFQHPRAIDMNLVDAQQARRVLDRLVGYNISPLLWKKVKKGLSAGRVQSVALRLIIDREK
EIKQFQPEEYWTIQAEFVKGSETFTASFYGVDGQKLELKNEADVSAILRRINGNHFTVTS
VTKKERKRNPVPPFTTSSLQQEAARKLNFRTKKTMMIAQQLYEGIDLGSEGTVGLITYMR
TDSTRVSESAQQEALSYIEATFGKEFAAQEKRKEKKSVNAQDAHEAIRPTSVFRDPEKVK
PYLTRDQFRLYKLIWERFIASQMAAALLDTMSVELENEGVIFRASGSKVKFPGFMKVYVE
GTDDQTDEQDRFLPDLQEGETVVSKDIEPKQHFTQPPPRYTEARLVKTLEELGIGRPSTY
APTIDTIQKRNYVVLENKRFVPTELGEIVVELILEFFPEIIDVEFTAKMEKNLDEIEEGK
VQWVKVVDEFYREFEKRLQIAEKEMKEVEIKDEPAGIDCEVCGSPMVYKMGRFGKFVACS
NFPECRNTKPIVKEIGVKCPKCHEGNIVERNSKKKRIFYGCDRFPQCDFVSWDKPLARRC
PKCEGLLVEKKLKKGVQVQCTSCDYEEEPQS
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtctgactatcttgtcatcgtggaatcgccggcgaaagcgaaaacaatcgagcgatat
ttaggaaaaaaatataaagtgaaagcttcgatgggacatgttcgcgatctgccaaaaagc
caaatgggcgttgatataaataatggctatgagccaaagtatatcacgattcgcggaaaa
ggacagatcattaaagagctaaaaacagcagcgaaaaaagcaaaaaaagtgtttcttgct
gcagacccggaccgcgaaggggaagcgattgcttggcatttagcaaatatgctcgatctt
gacattcattccgattgccgcgttgtctttaatgagattacgaaagacgcggttaaggag
tcatttcaacatccgcgggcgatcgatatgaatttggtggacgcgcagcaagcgcgccgc
gtgttggatcggctcgtcggctacaacattagcccgctgctttggaaaaaggtgaagaaa
ggcttgagcgcggggcgcgtccagtccgtagcgctgcgtttgatcattgatcgtgaaaaa
gagattaaacaatttcagccggaagagtattggacgattcaagcggaatttgtgaaagga
agcgaaacgtttaccgcttctttctatggagtggacgggcaaaagcttgaattaaaaaac
gaagcagacgtttccgcgattttgcggcgcatcaacggcaatcactttacggtaacatcg
gtgacaaaaaaggagcggaaacgcaatccagtgccgccgtttacaacctcttccttgcag
caggaagcagcacggaaactcaactttcgcacgaaaaaaacgatgatgatcgcccagcag
ctatacgaaggaattgatcttggcagcgaaggaacggtcggattaattacttatatgcgc
acggactcgacaagagtatcggaaagcgcgcaacaagaggcgctctcttatatagaagcg
acgtttggaaaagagtttgccgcgcaagaaaagcgaaaagaaaagaaaagtgtgaatgcg
caagatgcgcatgaagcgattcgcccgacgtctgtgttccgcgacccggagaaggtaaag
ccgtatttaacccgcgatcagttccgcttgtacaagctgatttgggaacgttttatcgca
agccaaatggcggccgcgcttctagatacgatgagcgttgagctggaaaacgaaggggtg
atctttcgggcaagcggctcgaaagtaaaatttcctggttttatgaaagtatatgtggaa
ggaacggacgaccaaacagatgaacaggaccgctttctcccagatttacaggaaggagaa
accgttgttagcaaggatattgaaccgaagcagcacttcactcagccgcctcctcgctac
acggaagcgcggcttgtgaaaacgctagaagagcttggcatcggccggccgtccacgtat
gcgccgacgattgatacgattcaaaagcggaactatgtcgtgctagaaaataaacgcttt
gttccgacagaactcggagaaattgtggtggaacttattttagagtttttcccggagatt
attgatgtggaatttacagcaaaaatggaaaagaatttagacgaaattgaagaaggaaaa
gtacaatgggttaaagtggttgacgaattctaccgggagtttgaaaaacggctgcaaatc
gcggagaaggaaatgaaagaagttgagattaaggatgaaccggcaggaatcgattgcgaa
gtatgcggcagcccgatggtatataaaatggggcgcttcggtaaatttgtcgcttgctcg
aattttccagaatgccgcaacacaaagccgatcgtcaaggaaatcggcgtcaaatgtcca
aaatgccatgaaggcaatattgtcgaacgcaacagcaagaaaaagcggatcttttacgga
tgcgaccgtttcccgcaatgcgattttgtctcatgggataagccgcttgcccgtcgatgc
ccaaaatgcgaagggttgttagtggaaaagaaattgaaaaaaggtgtgcaagtgcaatgc
acatcatgcgactacgaagaagaaccacaatcttga
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