Parageobacillus sp. KH3-4: PspKH34_27670
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Entry
PspKH34_27670 CDS
T08468
Symbol
rnj_2
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
parg
Parageobacillus sp. KH3-4
Pathway
parg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
parg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PspKH34_27670 (rnj_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parg03019
]
PspKH34_27670 (rnj_2)
Messenger RNA biogenesis [BR:
parg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PspKH34_27670 (rnj_2)
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
BDG48206
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Position
2779160..2780827
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AA seq
555 aa
AA seq
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MKFLNDHQVGVFALGGLGEIGKNTYGVQFQDEIIVIDAGIKFPEDELLGIDYVIPDYTYL
VKNAEKVKGLFITHGHEDHIGGIPYLLKQVNIPIYGGKLALGLIRNKLEEHGLLRQAKLI
EIREDDVIRFQKTAVTFFRTTHSIPDSYGIVVKTPVGQIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEIPHFTMSERRVGESIHDIFRKVHGRIIFATFASNIHRLQQ
VTEAAVMNNRKIAVFGRSMEAAIEIGQELGYIRCPKDTFVDANEINRLPANRVTILCTGS
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTVSVNRTINMLYRAGAEVIHGPL
NDIHTSGHGGQEEQKLMIRLMKPKYFMPIHGEYRMQKMHAKLAIDCGVPEENCFIMDNGE
VLGLSENDARIVGKIPSGSVYIDGSGVGDIGNIVLRDRRILSEEGLVIVVVSINMKDFKI
AAGPDIISRGFVYMRESGDLISDAQALITKHLEKVLERKTNQWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttttaaatgatcatcaagttggcgtatttgccctcggtggattaggggaaatc
gggaaaaatacatacggcgtgcaatttcaagatgaaattattgtgatcgatgccggaatt
aaatttcctgaagatgagctgctcggaattgattacgtcattcccgattacacgtattta
gtcaaaaacgcggagaaagtaaaaggattgtttattactcacgggcacgaagatcatatc
ggtggaattccatacttgctaaagcaagtaaatattccgatctacggcggaaaattagcg
ttagggctaatccgcaacaagctggaggagcacgggcttcttcggcaagcgaaactgatt
gagattcgcgaagacgatgtcattcgctttcaaaaaacagcggtgacatttttccgaacg
acacacagcattcctgacagttacggaattgttgtgaaaactcctgtaggacaaatcgtt
catacgggagatttcaaatttgacttcactcctgtcggcgagccggcaaacttaacaaaa
atggcagaaatcggcaaagaaggggtcctttgtctgctttccgacagcacaaatagtgaa
atcccgcacttcaccatgtccgagcgccgcgtcggcgaaagcattcacgacatcttcaga
aaagtgcatggacggattatttttgcgacatttgcttccaatatccatcgactacagcaa
gtaaccgaagcagctgtgatgaataaccggaaaattgccgtatttggaagaagtatggaa
gcagccattgaaatcggacaagagctcggttacattagatgccctaaagatacctttgtt
gatgcaaatgaaatcaaccgcctccctgccaaccgcgtgacgattttatgtactggcagc
caaggcgaaccgatggcggcgctgtcgcgcattgccaacggcacccaccggcaaattcaa
attattcctggcgacaccgtcgtcttttcttcatcaccgattccgggcaatacggtaagc
gttaatcgaacgattaatatgctttatcgcgccggcgctgaagtcattcatggtccgctg
aacgatattcatacatctggacatggcgggcaggaagaacaaaagttaatgattcgcttg
atgaaaccgaaatattttatgccgattcacggagagtaccgcatgcaaaaaatgcacgcg
aagctcgcaatagattgcggagtgccagaggaaaactgtttcatcatggataacggtgaa
gtgcttggtttaagcgaaaacgacgctcgcatcgtcggcaaaattccgtccggctccgtt
tatatcgacggcagcggcgtcggcgacatcggtaacatcgtcttgcgcgaccgccgcatt
ttgtcagaggaaggacttgttatcgtagttgtcagcatcaatatgaaagatttcaaaatc
gcggctggtccagatattatttcgcgcggatttgtatatatgcgcgaatccggcgactta
atcagcgacgcacaagcgctcattacgaaacatctcgaaaaagtgctcgaacgcaaaaca
aaccagtggtcggaaattaaaaatgaaattaccgatacgcttgctccgtttttatatgaa
aaaacgaaacggagaccgatgattttaccaattattatggaaatataa
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