Parageobacillus sp. KH3-4: PspKH34_30500
Help
Entry
PspKH34_30500 CDS
T08468
Symbol
sbcC
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
parg
Parageobacillus sp. KH3-4
Brite
KEGG Orthology (KO) [BR:
parg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
parg03400
]
PspKH34_30500 (sbcC)
DNA repair and recombination proteins [BR:
parg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PspKH34_30500 (sbcC)
Archaeal homologous recombinant proteins
PspKH34_30500 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
ABC_tran
AAA_21
NPV_P10
Motif
Other DBs
NCBI-ProteinID:
BDG48489
LinkDB
All DBs
Position
complement(3050811..3054161)
Genome browser
AA seq
1116 aa
AA seq
DB search
MKPISLTIAGLHSFREKQTIDFQSLCEGGVFGIFGPTGSGKSTILDAMTLALFGSVERAP
NNTHGIMNHAENELFVSFTFELENASCTKRYTVERSFKRGDEWRLKSGICRLIEVGAENV
VLADKWTEVNKAVEQLLGLTMKDFTRAVVLPQGKFAEFLSLKGAERRQMLQRLFHLEPYG
DKLNKKLKEKLAAISSELNEVIAEKAGLGDASKEALERAKQELDMLWELLKKRQAELHDM
EVKIERNKQLWAWQKEKETLEAELVRFSMEEPHIRALENKKERAEQAERMWPYLERYEEA
RRLVANAQQKQHELRQKLAQAEALHEKAMRHYERIRQEKAASEPRLLAKKEQLTQAQQLA
AQIRSLEAELNEMEKQIRQVEEEERQKREQWQEAAALYERGLEKQQMLKTELQKHLASIE
QKEVIERAYDEKQQIERIADALQHIQQRLEQKQQAQQQANEEAEKRKRQAEAAKEKLHFL
FQKIEKIYHSVCERQWQLEKLMYRYEQQLEQEREKVEQAKTAEMAATLAKQLRQGEPCPV
CGSREHPNPYVYKHHDSDSGKIAMFEQQVKHGQSYMQMLHALKAQLEQLAQFIGNEWAFQ
RFDVSKWKVEEDIDIAVEVKALQQDCLQLKEAVQQALQKWRDAESSQQAIEQERRVLEKD
IRELQTEWQLRLDEYNRLQASWREKYADFSFTEIEVIRNQMRKREEIVRQLQKRIDDSIP
FLDNKLSEKERLAQQLREIETEKVRLVSLYRAKQQQIDSYRQQLLERAGTAQMEEQLLQI
EQQLLRLKKEEEQAYQRWLQAQKQHQTLEAEAKAIQQSLEEGKAQYEEAKSRWLQELKKT
AFADENEVKEAKVAAEKRFEWEQQIKDYWQKVQHAQHRLGQLAEAMGGETVDQQQWEQLQ
AVYEEVKQQVDSTMQQVGAAQNKVEELTEKHKRFAELEKKQQELTALVDRYKHLQSILKG
NSFVEFLAEEQLIQVTRMASERLSSLTRQRYSLEVDSQGGFLIRDDANGGVKRPVTTLSG
GETFLTSLSLALALSAQIQLRGEYPLRFFFLDEGFGTLDAELLDTVISALEKLHSQRLSV
GVISHVQEIRARLPKRLIVEPAEPSGRGTRVKLEVM
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
gtgaagccgatttcgttaacgatagctggtttgcacagtttccgcgaaaaacaaacgatt
gatttccaatcgttatgcgaaggcggcgtcttcggcattttcggtccgacgggaagcgga
aaatcaacgattttagacgcgatgacacttgcgttgtttggcagcgtggaacgcgcgcca
aacaacacgcatgggattatgaatcacgcggaaaatgagctgttcgtttcttttacattt
gaattagaaaacgcttcatgcacgaagcgctatacggtggagcgcagctttaaacgcggc
gatgaatggcggttaaaaagcggaatatgccggcttatcgaagttggcgcagaaaatgtt
gtgctggctgataaatggacagaagtcaataaagcggtggagcaattgctaggtttgacg
atgaaggattttacgcgcgctgtcgtgttgccacaaggaaaattcgccgaatttttgtca
ttgaaaggtgccgaacgtcggcaaatgctacagcgcctttttcatttggagccgtatggc
gataagttaaacaaaaaattaaaagagaaacttgccgccatttctagtgaattaaatgag
gtgatcgctgagaaggcggggctgggagatgcctcgaaagaagcgctcgaacgggcaaaa
caagaattggacatgctttgggagttattaaaaaaacggcaagcagaattgcatgatatg
gaagtgaaaatagaacgaaataaacagctatgggcttggcaaaaggaaaaagaaacgctt
gaagcggaactggtgcgtttttctatggaagaaccgcatattcgcgcattggaaaataaa
aaagaacgcgcggaacaagcggaacgaatgtggccatatctcgaacggtatgaggaagcg
cgccgattggttgccaatgcgcagcagaagcagcacgaattgcggcaaaagctcgcacag
gctgaagcgttgcatgaaaaagcgatgcgccattatgaacgcattcgccaggaaaaagcc
gcttctgaacctcgcttgttggcaaaaaaagaacagctaacccaagcacaacagctggcg
gcgcaaatccgttcgcttgaagcggaactaaatgaaatggaaaaacaaattcgccaggtg
gaagaggaagaacggcaaaaacgcgagcagtggcaggaagcggcagcgctatatgaacgc
gggctcgaaaaacaacagatgctgaaaacagagctgcaaaagcatttagcttcaatagag
cagaaggaagtgattgaacgggcatacgatgaaaaacagcaaatcgaaagaatagcagat
gcgctccaacatattcagcagcggctggaacaaaaacagcaagcgcagcagcaagcaaac
gaagaagcggaaaaacggaaacggcaagcagaagcggcaaaagaaaaattgcactttttg
tttcaaaagatagaaaaaatctatcattctgtttgtgaacggcaatggcagctagaaaaa
ctaatgtatcggtacgaacaacaactggaacaagaacgagaaaaagtggaacaggcgaaa
actgcggagatggcggcgactcttgccaaacagcttcgccagggggaaccgtgccctgtt
tgcgggtcgcgtgagcatccgaatccgtatgtatataagcaccatgatagcgacagcggg
aaaatcgctatgtttgagcagcaggtcaaacatgggcaatcttatatgcaaatgctgcac
gcgttaaaagcgcagcttgagcaactagcgcaattcatcggaaatgagtgggcgtttcaa
cgttttgacgtaagtaaatggaaagtggaagaagatatcgatattgccgtggaagtaaag
gcacttcaacaagattgtttacagttaaaagaagccgttcagcaggcgctgcaaaaatgg
cgtgacgccgaatcgtcgcaacaagcgatcgaacaagaaaggagagtgctagagaaagat
atacgagagttgcaaacggaatggcagcttcgtttggatgaatacaatcgattgcaagca
agctggcgcgaaaaatatgccgacttttcttttacggagatcgaagtgatccgcaatcaa
atgcgaaaacgcgaagaaatcgtccggcaattgcaaaaacggatcgatgacagcatcccg
tttctcgacaataaattaagcgaaaaagaacggttggcccaacaactgcgggagatagaa
acggaaaaagttcgcctcgtttcgttgtacagggctaaacagcagcagatcgacagctat
aggcaacagctgttggaaagagcgggaacagcgcaaatggaagagcaacttctgcaaata
gagcagcagctgcttcgtttaaaaaaagaggaagaacaagcctatcaaagatggcttcag
gcgcaaaaacagcatcaaacgttggaagcggaggcgaaagcgatacagcagtcattggaa
gaaggaaaagcgcaatatgaggaagcgaaatcgcgttggcttcaggaattgaaaaaaacg
gcgtttgccgacgaaaacgaagtgaaagaagcaaaggtagcagcggaaaaacgattcgag
tgggaacagcaaatcaaagattattggcagaaagtgcaacatgctcagcatcgcctcggg
cagcttgccgaagcgatgggcggggaaacggttgatcaacaacaatgggagcaattgcag
gctgtatacgaagaagtgaaacaacaggtagacagcacgatgcagcaagtaggcgccgcg
caaaacaaagtggaagaattaacggaaaaacataagcgttttgccgaattagagaaaaaa
cagcaagagctgaccgctcttgtcgaccgttataaacatttgcagtcgattttaaaagga
aacagctttgtcgaatttttggcggaagaacagcttattcaagtgacgaggatggcttcc
gaacgattaagttcgttgacgagacagcgctattcgttggaagtcgactcgcaaggagga
tttctcattcgcgatgacgccaatggcggggtaaagcgtccggtgacaacattatcaggt
ggagaaacgtttttaacgtcattatcgcttgcattggcgttgtcggcgcaaattcaattg
cgcggcgaatatccgctccggtttttcttcttggacgaagggtttggcacgttggatgcg
gaacttcttgataccgttatttctgcacttgaaaaacttcattcgcagcggctgtctgtc
ggagtgatcagccatgtgcaagaaattcgcgctcgcttgccgaaacggctcattgttgag
ccggcggaaccgtctgggcggggaacacgagttaaattagaagttatgtaa
DBGET
integrated database retrieval system