Parageobacillus sp. KH3-4: PspKH34_30530
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Entry
PspKH34_30530 CDS
T08468
Symbol
addB
Name
(GenBank) ATP-dependent helicase/deoxyribonuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
parg
Parageobacillus sp. KH3-4
Brite
KEGG Orthology (KO) [BR:
parg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
parg03400
]
PspKH34_30530 (addB)
Enzymes [BR:
parg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PspKH34_30530 (addB)
DNA repair and recombination proteins [BR:
parg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
PspKH34_30530 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
BDG48492
LinkDB
All DBs
Position
complement(3059113..3062622)
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AA seq
1169 aa
AA seq
DB search
MSLRFLLGRSGSGKTTTCLNEIRDKLKEDPKGNPIVYLVPEQMTFQSEYALIHTPGLDGM
IRAQVFSFTRLAWRVLQETGGMSRYHINDIGMQMMIRKIVEHRKQQLKLFGRAVDKAGFI
QQLHDTITECKRYCVAPQHLREHVKTLTEQGKKPAEKVLADKLNDISIVYEELERSLFNH
YIDSEDYLRLLSEKIPHSHYLRNAEIYIDGFHQFTPQEYMVLEQLLIHCKRVTVSLTVDA
PYDDRLPNELHLFYLTAKTYHDIRQMALLNGVAIEDAVILQKNMRHQEKALAHLEAHYHA
RPAVAFSEKMNSIIVYEAANRRAEVEAIAREIVRLVRDEGYRYRDIALIVRNTEDYRDLV
KTVFSDFHIPYFMDEKEPMHHHPLIELLRASMEIITSRWRYESVFRAIKTDLLFPAEEDT
DALREAMDQLENYVLAYGIKGEKWTNGERWTYRRYQALEGLSIPQTDEEKQYEEKLNQWR
DMIAAPLSKLERRMRRAKDGRSLCEAIYLFLEELQIPRKLEKMSKEAEEQGRLMEARQHE
QVWNAVIDLFNQYVELLGNEPIPLAEFAKIIETGLDRLEFSLVPPAIDQVIVAQLDRSRL
IDVKCVFIIGVNEGVIPAKAKEDGLLAETERELLQQFGTRVAPGGREQLFYEPFFIYLAL
TSPSERLYVTYPLANEEGKALSPSIIIKHLADLFPNLQKRVCGNDPLDAELAEQRAFVTA
PRATLTYLVAQLQAWKRHYSIAPLWWDVYNFYASDPQWREQARKALAGLFYANEATPLKK
EISKRLYGKKIQASVSRMEQFQKCPFSHFASHGLRLKEREVFRLDAPDIGQLFHYALKII
SDRLREAKIDWRNLSKQQCEQLSTEAVEQIAPLIQQQVLLSSNRYHYMKRKLRNIVARTT
NVLSEHAKASSFVPIGLELEFGPNGALPPLTFRLPDGTVMELVGRIDRVDKAESSRGVLL
RVIDYKSSAKTLNLTEVYYGLALQMLTYLDIVLTYAEQLVGKEAFPAGILYFHVHNPVIK
SDQLLHDEKEVERKLLEQFKMRGLLLGDAEAIRLMDTQMEEGKWSLIVPAQITKKGAIHA
KSSVISEEDFWHLRQHIRHLFQMIGMQIADGIVDVAPYKLNEQTPCEFCSFKPVCQFDES
FPNHRYRLLIPQENQEIVRKLSEGKDFNE
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctccgatttcttttaggacgatccggaagcggaaaaacaacgacgtgtcttaac
gaaattcgcgataaactaaaagaagatccgaaagggaacccgattgtttatcttgttccg
gaacaaatgacgtttcaatcggaatatgcgttaatacatacaccaggattagacggaatg
atacgggcgcaagtgtttagctttacgcggttagcgtggcgagttttgcaagaaacggga
ggaatgagccgataccatatcaatgatatcggaatgcagatgatgattcggaaaattgtc
gaacatcggaagcaacaattgaaattatttggccgcgctgtcgataaagcgggctttatc
caacagcttcacgatacaattacagaatgcaaacgttactgcgttgctccgcagcatctc
cgcgaacatgtaaaaacgctgacagagcaagggaaaaagccggctgaaaaagtgttagcc
gataagctaaatgatatatctatcgtttatgaggagctagagagaagtttattcaatcat
tacatagattccgaagactatttgcgattgctttccgaaaaaatcccacactcccactat
ttgcggaatgcagaaatctatattgacgggtttcaccaatttacgccgcaggagtatatg
gtgcttgaacagctgcttattcattgtaagcgggtcactgtttcattaacggtggatgcc
ccttacgacgatcggttaccaaatgagttgcatttattttatttaaccgcgaaaacgtat
catgatattcgccaaatggcgttgttaaacggcgtcgcgattgaagacgcagtcattctc
caaaaaaatatgcgccatcaagaaaaggcgcttgcccatcttgaagcgcattaccatgct
cgtcccgccgtcgccttctcggaaaaaatgaattccatcattgtatatgaagcggcaaac
cgccgcgcggaagtcgaagcgattgcccgcgaaatcgtccgccttgttcgcgacgaagga
taccgttaccgcgatatcgctttgatcgtccgcaatacggaagattatcgcgatttagtg
aaaacggttttttctgattttcatattccttatttcatggatgagaaagagccgatgcac
catcatccgcttattgagttgctgcgggccagcatggaaattattacatcgcgctggcgt
tacgaatcggtgtttcgcgccattaaaaccgatttactatttccggcggaagaagatacc
gacgcgctgcgcgaagcgatggaccagctggaaaactatgttctcgcatatgggattaaa
ggggaaaaatggacgaatggcgagcggtggacatatcgccgctaccaggcattagaagga
ctatccattccgcaaacagatgaggaaaaacaatacgaagaaaagctgaatcaatggcgc
gatatgattgcagcgccgctttcaaagctagagcgccgcatgcgcagggcaaaagacggc
aggagcctttgtgaagcgatttatctgttcttagaagaattgcaaattcctagaaaacta
gagaaaatgagcaaagaagcggaagaacaaggaaggctgatggaagcgcggcagcatgag
caagtatggaatgcagtgattgatttattcaatcaatatgtggaattgttgggaaatgag
ccgattccgctagcggagtttgcgaaaatcatcgaaacggggcttgaccgtcttgagttt
tcgctcgttccgcctgcgatcgaccaagtgattgttgcccaattagaccgttcgcggctt
attgatgtcaaatgcgtgtttattattggcgtaaatgaaggggttattccggcgaaagcg
aaagaagacggattgctcgcagaaacggaacgtgaacttttgcagcaatttggaacgaga
gtcgcgccgggaggaagagaacagttattttatgaaccgtttttcatttatttagcgtta
acgagcccaagcgagcgcctatatgtgacatatccgctggcaaacgaagaaggaaaagcg
ctctctccttcgatcattattaagcatcttgccgatttatttccgaatttgcaaaagcgt
gtctgcggaaacgatccgcttgatgcggagcttgcggaacaacgagcgtttgtcaccgct
ccgcgggcgacgctgacgtatcttgtggcgcagctgcaagcatggaaacggcattattcg
attgcgccgctttggtgggatgtatataacttttacgcaagcgatccgcaatggagagag
caggcgcgcaaagcgcttgccgggctgttttatgcgaatgaggcaacgccgctgaaaaaa
gaaattagcaagcggctatacggaaaaaaaattcaggcgagcgtatcgcgcatggagcag
tttcaaaaatgcccgttttcccactttgcttcccacggattgcggttaaaggagcgggaa
gtttttcgtcttgatgctcctgacatcgggcaactgtttcattacgcgctaaaaatcatt
tccgaccgcctccgcgaagcgaaaatagattggcgcaatttgtccaaacaacaatgcgag
caattgtcaacagaagcggtggaacaaatcgcgccgctcatccagcagcaagtgttgctc
agctccaatcgataccactatatgaaacggaagttgcgaaacattgttgcgcgaacaacg
aacgtattaagcgagcacgccaaagcaagcagctttgtgccgattggccttgaactggag
tttgggccaaacggcgcgcttccgccgcttacgttccgccttccggacggaacggtaatg
gagcttgtcggccgcatcgatcgcgttgataaagcggaaagttcaaggggagtgctgttg
cgcgtcattgactataaatcgagcgctaaaacgctaaatttaacggaagtgtactacggt
cttgcgctacaaatgctcacttacttggacattgtgctcacttacgcggaacagctagtc
ggcaaggaagcttttccggccggaattctttatttccatgtgcacaatccggttattaaa
agcgatcagcttcttcatgatgaaaaagaagtggaacggaagctgctggaacaatttaaa
atgcgcgggcttttgcttggggatgcggaagcaatccgtttgatggatacgcaaatggag
gaaggcaaatggtcgctgatcgttccggcgcaaattacaaaaaaaggagcaattcacgcc
aaatcttccgtcatcagcgaagaagatttttggcaccttcgccagcatatccggcatctg
tttcaaatgatcggcatgcaaattgccgatggaattgtcgatgttgcgccatacaagctg
aatgaacagacgccttgcgaattttgttcgtttaagccggtttgccagtttgacgaatcg
tttccgaatcatcgctatcgcctgttaattccgcaagaaaatcaggaaatcgtgcgaaaa
ttatcggaagggaaggacttcaatgagtaa
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