Parageobacillus sp. KH3-4: PspKH34_35260
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Entry
PspKH34_35260 CDS
T08468
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
parg
Parageobacillus sp. KH3-4
Pathway
parg03420
Nucleotide excision repair
parg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
parg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PspKH34_35260 (pcrA)
03430 Mismatch repair
PspKH34_35260 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
parg03400
]
PspKH34_35260 (pcrA)
Enzymes [BR:
parg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PspKH34_35260 (pcrA)
DNA repair and recombination proteins [BR:
parg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PspKH34_35260 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
PspKH34_35260 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PcrA_UvrD_tudor
AAA_19
UvrD_C_2
Viral_helicase1
AAA_11
AAA_30
ResIII
Terminase_6N
DEAD
DUF3226
Motif
Other DBs
NCBI-ProteinID:
BDG48965
LinkDB
All DBs
Position
complement(3506995..3509193)
Genome browser
AA seq
732 aa
AA seq
DB search
MNFLSEKLLANLNEQQQAAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLAEKQVAPWNIL
AITFTNKAAREMKERVQALLGGAAEEIWISTFHSMCVRILRRDIDRIGIDRNFSILDTTD
QLSVLKNILKEKNIDPKKFDPRSILGTISSAKNELLSPEKFAKKAGNYYEKIVSDVYEEY
QKRLLRNHALDFDDLIMTTIQLFERVPEVLEHYQYKFQYIHIDEYQDTNRAQYMLVKMLA
SRFQNICVVGDADQSIYRWRGADIQNILSFEKDYPNAKVILLEQNYRSTKRILQAANEVI
ENNVNRKPKKLWTENPEGQKIVYYEAMNEADEAQFVAGKIKEYVESGKRRYSDFAILYRT
NAQSRVMEEVLLKSNIPYQIVGGLKFYDRKEIKDILAYLRVIANPNDDISLLRIINVPKR
GIGASSLDKIVNYASENELSVFEALGELEHIGLSARIAASLLEFRRLLEQWGQLQEYVSV
TELVEEVLDKSGYREMLKAENTLEAQSRLENIDEFLSVTKHFENVSEDKSLIAFLTDLAL
ISDIDQLNDANGEDGDAVVLMTLHSAKGLEFPVVFLIGMEEGIFPHSRSLEDEDEMEEER
RLAYVGITRAEEELFLTSAQMRTLFGYTNMNAVSRFVREIPEELVERVSKRTAWASAAAG
KQATVRKIAVASSTGGEEIPWKVGDKVEHKKWGIGTVVSVRGEGEDKELDIAFPSPIGIK
RLLAKFAPITKV
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
gtgaattttttgtcggaaaaattactcgctaacttaaatgaacagcagcaagcagctgtt
aaaacgacggaagggccgcttctcatcatggcgggggcgggaagcggaaaaacgcgcgtg
ttaacgcaccggatcgcctatttgctggcggaaaagcaggtcgcgccgtggaacatttta
gcgattacgtttaccaataaggccgcgcgcgaaatgaaggaacgcgtgcaggcgctgctt
ggcggggcggctgaggaaatttggatttccacgtttcactccatgtgtgtccgcattttg
cgccgcgatattgatcgcattggcattgaccgcaatttttccattttagacacgactgac
cagctttctgtgttaaaaaacattttaaaagaaaaaaatatcgacccgaaaaaatttgac
cctcgttcgatactcggaacgatcagcagcgcgaaaaacgaattgctctcccctgaaaag
ttcgcgaaaaaagccggaaactactatgaaaaaatcgtcagcgacgtatatgaggaatat
caaaagcggcttttgcgcaaccatgcgctcgattttgacgacttaattatgacgacgatt
cagttgtttgagcgtgtgccggaagtgctcgagcattatcaatataaatttcaatacatt
catattgacgagtatcaagataccaaccgggcgcaatatatgcttgtaaagatgctggcg
tcgcgttttcaaaacatatgtgtcgtcggcgatgccgatcagtcgatttatcgctggcgc
ggcgcggacatccaaaacattttatcgtttgaaaaagattacccgaacgcgaaagtcatc
ttgcttgagcaaaactaccgttcaacgaagcgaattttacaggcggcaaacgaagtcatt
gaaaacaacgtcaaccgcaagccgaaaaaactatggacggaaaacccggaaggacaaaaa
atcgtatattatgaagcgatgaacgaagcggatgaagcgcaatttgtcgccggcaaaatc
aaagaatatgtggaaagcggaaaacgccgatattccgattttgcgattttataccgcacg
aacgcccaatcgcgggtgatggaagaagtgctgctcaagtcgaacattccttaccaaatc
gtcggcggcctgaagttctatgaccgcaaagaaattaaagatattttggcatatttgcgg
gtgattgcaaacccgaatgatgatattagtttgctgcgcatcattaatgtgccgaagcga
ggcattggcgcttcttcgctcgataaaatcgtaaactatgcttccgaaaacgaattatcg
gtgttcgaagcgctcggcgaactcgaacatattgggctttctgcgcgaattgccgcttcc
ttgcttgaatttcgccgcctgcttgaacaatgggggcagctgcaagaatacgtttccgta
acggaattagtggaagaagtgttggacaagtctggctaccgcgagatgctgaaagcggaa
aacacgttggaggcgcaaagccgtttggaaaacatcgatgagtttttatcggtgacgaag
cattttgaaaacgtaagcgaagataagtcattaatcgcgtttttaactgacttggcatta
atttccgacattgaccagctaaatgatgcgaacggcgaagacggggacgcagttgtgcta
atgacgctccattccgcaaaaggattggaatttccggttgtctttttaatcgggatggaa
gaaggaatttttccgcatagccgttccctggaagatgaagatgagatggaagaagagcgc
cgcctcgcttatgtcgggattacccgcgcagaagaagagctgtttttaacaagcgcacaa
atgcggacattgtttggatacacaaatatgaacgcggtatcccgctttgttcgcgaaatt
ccagaagagctagtggaacgggtgagcaaacgaacggcatgggcatcggccgcggctgga
aaacaagcgactgtccgtaaaatcgcggttgcctcttctacgggaggagaagaaatccct
tggaaagtcggagataaagtcgaacataaaaaatggggaatcggcaccgttgtcagcgtt
cgcggagaaggggaggataaagagcttgacatcgcgttcccaagcccgatcggaattaaa
cggttgcttgcgaaattcgctccgattacaaaggtgtaa
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