Parageobacillus sp. KH3-4: PspKH34_35960
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Entry
PspKH34_35960 CDS
T08468
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
parg
Parageobacillus sp. KH3-4
Pathway
parg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
parg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PspKH34_35960 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parg03019
]
PspKH34_35960 (cshA)
03009 Ribosome biogenesis [BR:
parg03009
]
PspKH34_35960 (cshA)
Enzymes [BR:
parg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PspKH34_35960 (cshA)
Messenger RNA biogenesis [BR:
parg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PspKH34_35960 (cshA)
Ribosome biogenesis [BR:
parg03009
]
Prokaryotic type
rRNA helicases
PspKH34_35960 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
BDG49035
LinkDB
All DBs
Position
complement(3585257..3586654)
Genome browser
AA seq
465 aa
AA seq
DB search
MTTFYELGLSNELMKAIRRMGFEETTPIQAETIPLSLQNKDVIGQAQTGTGKTAAFGIPL
VEKIDVTNEAIQGLVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIGRQIRALKKR
PHIIVGTPGRIIDHINRKTLRLENVHTVVLDEADEMLNMGFIDDIEAILSNVPEKRQTLL
FSATMPEPIRRIAERFMNEPQIVKVQAKEMTVPNIQQYYLEVQEKKKFDILTRLLDIQAP
ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHNIERTTK
RKMERMKPPTLDEALEGQQRIAVEKLVATVETENLSFYKRAAEELLEEHDSVSLVAACIK
MLTKEPDTTPVQLTEEPPLPVKREKKRANRPGSQRERTKKRRVAR
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
ttgacgacattttacgaattaggattaagcaacgaattgatgaaggcgattcgccggatg
gggtttgaggaaacgaccccgattcaagcggaaacgattccgttgagcctgcaaaataaa
gatgtcattggacaggcgcagaccggcaccggaaaaactgccgcttttggcattccgctc
gtcgaaaaaatcgatgtaacaaacgaggcgattcaaggccttgttgtggcgccgacacga
gagctggcaattcaagtatcggaagaactttataaaattggcgcagtcaagcgcgttcgc
gtgttgccgatctacggcgggcaggatattggacggcaaattcgcgcgttgaaaaaacgc
ccgcatatcattgtcggaactcctgggcgaattattgatcatatcaaccgtaagacgctt
cgcttagaaaacgtgcacaccgttgtgctcgatgaagcggatgaaatgcttaatatgggg
tttatcgacgatattgaggcgattttaagcaatgtccctgaaaagcggcagacattatta
ttttccgcaacgatgccggagccaatccgccgcatcgccgagcggtttatgaatgagccg
caaattgtgaaagtccaagcgaaggaaatgacagttcccaacattcaacaatattatttg
gaagtgcaagaaaagaagaagtttgatattttaacgcgcttattagacattcaagcgccg
gaattggctattgttttcggacgtacaaaacggcgcgtcgatgaattggcggaggcgctc
aatttacgcggatacgctgctgaaggaattcatggagatttgagccaagcgaaacggcta
tccgttcttcgcaaatttaaggaaggctcgatcgagattttagtcgctaccgatgtagca
gcgcgcggattggatatttccggtgtgacgcacgtctataattttgatattccgcaagac
ccggaaagctacgttcatcgtatcggccgcactggccgtgctggaaaaacaggcgtagca
atgacgttcgttacgccacgggaaattgggcagcttcataatattgagcgcacgacgaaa
cggaagatggagcggatgaaaccgccgacgctggatgaagcgcttgaaggacagcagcgt
atcgcggtggaaaagctagtggcgacggtcgaaaccgaaaatctttccttttataaacgt
gcagctgaagaattgctggaagagcacgattccgtatcgcttgtcgctgcgtgcattaaa
atgctgacaaaagagcccgatacgacgccggtgcaattaaccgaagagccaccgcttccg
gtaaaacgggagaaaaagcgcgcaaaccgcccaggaagccaacgggagcgtacaaaaaaa
cggcgcgttgctcgttaa
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