Parageobacillus sp. KH3-4: PspKH34_36200
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Entry
PspKH34_36200 CDS
T08468
Symbol
uvrD
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
parg
Parageobacillus sp. KH3-4
Pathway
parg03420
Nucleotide excision repair
parg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
parg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PspKH34_36200 (uvrD)
03430 Mismatch repair
PspKH34_36200 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
parg03400
]
PspKH34_36200 (uvrD)
Enzymes [BR:
parg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PspKH34_36200 (uvrD)
DNA repair and recombination proteins [BR:
parg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PspKH34_36200 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
PspKH34_36200 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
SLFN-g3_helicase
DEAD
PhoH
AAA_30
NACHT
AAA_16
nSTAND3
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BDG49059
LinkDB
All DBs
Position
3617805..3620171
Genome browser
AA seq
788 aa
AA seq
DB search
MNKELQQEQERLDSIMKIITEQIRMLEDETFRRRKEVIDIRKHFWDDVKVNIDTFDDFLE
TIIGLRQQAQLLSVSQSTHRHAFKRLSTLRRMQEVPYFGRIDFTEEGTSAAERIYIGIST
LTDTSGENILIYDWRAPISSIYYDYPPGPAEYATPGGVIRGMLEKKWQYIIRGGVIKSMF
DTSLTIGDEILKQVLGRVTDKHMHNIVATIQREQNRIIRHDRGRMLIVQGPAGSGKTSAA
LQRIAYLLYKYRDRLKSDQIILFSPNSMFNSYVSNVLPELGEENMQQVTFQEYLEHRLSK
EFQVEGPYEQLEYVLTEADDPSYRTRIASIRFKASTRFFEAIKTYWKSLEYSGMLFKDIL
FRGKPIVTAQQIAERFYSSDTSLRFHNRLEKLTDWLNKQIDKAEKLERTKPWVQEEIELL
SNEDYHKAHTHLRKKRRFKGESLNNYENEIEALGQLIVRQKLKPLRKRIRTLRFIDFKGI
YKQLFADPTRIKLWMEGETPKEWENICRLTVKMLDEGKLFYEDATPFLFLKDLIQGFQTN
VSIKHVLVDEAQDYSPFQFEYLKCLFPSARMTVLGDFNQAIFAHASETTDFHTLTSLYGP
DETDVITLTRSYRSTRQIVEFTRGLVPDGERITAFERDGDKPVLTRVSDQAELHRCIASK
VSELRNQGYNTIAIICKSAAESTTAYDALSNVEEIKLVTSDSLEYEQGIVVIPAYLAKGI
EFDAVIIYNASAQVYGNESLRRLFYTACTRAMHHLQLYSVGEPSPFLRNVAPGSLLLIPS
SQGTSRES
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagaacttcagcaggagcaagaacgattggacagcataatgaagataattaca
gagcaaatccgcatgctggaagatgaaactttccggcgccggaaagaagtgattgatatc
cgcaaacacttttgggatgacgtcaaggttaatatagatactttcgacgattttctggag
acgatcatcggcttgagacaacaggctcagctcctgtccgtaagccaaagcacccacaga
cacgccttcaagaggttgtctacgctgcgccgtatgcaggaggtgccttattttggccga
atcgatttcactgaagaaggaacttccgctgctgaacgaatctatatcggcatctccacg
ctcacggatacaagcggagagaacatccttatctacgactggcgggcgccgatctcgagt
atctactacgattaccctcccggtccggccgaatatgctacacccggaggtgtaatccgt
ggcatgctggagaaaaaatggcaatatatcatccgcggcggtgttatcaaatcgatgttc
gataccagtctcaccattggagacgagattttaaagcaggtgcttggcagagtcacagac
aaacatatgcacaacatcgtggccaccattcaacgggaacaaaaccggatcatccggcat
gatcgcgggcggatgctcattgtgcaaggccccgctggcagcggcaagacgtctgccgcc
ctgcagcggatcgcttacttgctctacaagtatcgggacaggctgaaatccgatcaaatc
attctattttcacctaattcgatgtttaatagctacgtatccaatgtgttgcctgaactt
ggcgaagagaatatgcagcaggtcacattccaggaatacttggagcatcggctgagcaaa
gaatttcaagtcgagggtccatacgaacaattggaatatgtgctgactgaagcggatgac
ccttcataccggactaggattgcgagcattcgattcaaggcatcgacccgttttttcgag
gcgatcaaaacatattggaagtcgctggaatactccggcatgctattcaaagatattcta
tttagaggaaaaccgatcgtcaccgcccaacaaatcgcggaaaggttttatagcagcgac
acctcgctccgctttcataacagacttgaaaagttgacggattggctaaacaagcaaatc
gataaagctgagaaacttgaacggaccaagccatgggtgcaggaagaaatcgagctgctt
agcaacgaagattaccataaggctcatacccatttacggaaaaaacgccgcttcaaagga
gaatcgttaaacaattatgagaacgagattgaagcgctaggccaattgatcgtccgccaa
aagctaaaaccgttgcgcaaacgaatccggacactccgtttcattgactttaaaggaata
tacaaacagcttttcgccgatccaacgcgtatcaaactgtggatggagggagaaacgccc
aaggagtgggagaatatttgccgattgactgtgaaaatgctagacgaaggcaaactgttt
tacgaagatgcaacgccgtttttatttctgaaagatctgattcaaggctttcagacgaac
gtctcgatcaaacacgtgcttgtagacgaagcgcaagattattctccgtttcaattcgag
tatttgaaatgtttgtttccctcggcaaggatgaccgtgctcggcgactttaaccaggcg
atcttcgctcatgccagcgaaacgaccgattttcacacacttaccagcttatacggaccg
gatgaaacggatgtgatcaccttgacacgcagctacagatccacaagacagatcgtcgaa
tttacgcgcgggcttgtgcccgatggtgaacggattactgcttttgaacgcgacggcgat
aagcctgtgctgacgagagtgtccgatcaggccgaactgcaccgctgcattgcttccaaa
gtctcagaattgcggaatcaggggtataatacgatcgcgattatatgcaaatccgctgcg
gaaagcaccaccgcatacgatgcactgagcaacgttgaagaaattaagcttgtgacgagc
gactcgctggaatatgaacaaggcattgtcgtcataccggcgtatttggccaaaggcatt
gaattcgacgccgtcatcatttataacgcatcggcgcaagtatacggcaatgagagcctg
cgcagattgttctacaccgcctgcacccgggctatgcatcacttgcagctttacagtgta
ggcgaaccgagcccctttttgcgcaacgttgcgccggggagtttacttctgatcccgagt
tcacaagggactagtcgggagtcttaa
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