Priestia aryabhattai: I5S86_26520
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Entry
I5S86_26520 CDS
T07135
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
parh
Priestia aryabhattai
Pathway
parh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
parh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I5S86_26520 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
parh03021
]
I5S86_26520 (rpoC)
03400 DNA repair and recombination proteins [BR:
parh03400
]
I5S86_26520 (rpoC)
Enzymes [BR:
parh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I5S86_26520 (rpoC)
Transcription machinery [BR:
parh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I5S86_26520 (rpoC)
DNA repair and recombination proteins [BR:
parh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I5S86_26520 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QPN45043
LinkDB
All DBs
Position
complement(5718471..5722670)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVKDRDGSITKNTRIVDTTVGRALLFQVVPAGLPYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGSATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEQWVEFIELNSIDEVVVRSPINCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGDKVEAGAIVAKW
DPHTHPIVTELKGTVTFVGMEENITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDANGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTQVLVENERLAADDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRREADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgcatcggtctggcgtcgcctgaaatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggccttttctgcgccaag
atctttggcccggtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggtgtgatctgcgagaagtgcggcgttgaagttgccttggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcttcgccggttgcccatatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgacatcgagcgcgtgctctac
ttcgagagctacgtcgtcatcgacccaggcatgactaccctcgagaagggtcagctgctg
aacgacgagcagtacttcgaagcgctggaagagttcggtgacgatttcgacgcccgcatg
ggtgccgaggctgtccgcgagctgctgcacgctatcgacctggagcacgagatcggtcgc
ctgcgcgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagctttccagggctcgggcaacctgcctgagtggatggtcctgacc
gttctgccagtactgccgccggacctgcgtccgctggttccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgatctgtcggcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtagacgccctgctggacaacggccgtcgcggtcgcgccatcactggctcgaac
aagcgtccgctgaagtccctggccgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctcggcaagcgtgtggactactccggccgttcggtaattaccgtaggcccgacc
ctgcgtctgcatcagtgcggtctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggctgccaagaagatg
gtcgagcgcgagctgccagaggtatgggacgttctcgctgaggtgattcgcgaacacccc
gtactgctgaaccgtgcaccgacccttcaccgtctgggtatccaggcgttcgagcctgtg
ctcatcgaaggcaaggccattcagctgcacccgctggtctgtgctgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgcctctgaccctggaagcacagcttgaagcg
cgcgcgctgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtactgggtctgtactacatgacccgtgaagccatcaatgcc
aagggcgaaggtcgcgtattcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagccgctctgcacgcgaaaatcaaggtccgtatcaacgagaccgtgaaagaccgtgat
ggcagcatcaccaagaacacccgcatcgttgacaccactgtcggccgtgcactgctgttc
caggttgtaccggcaggcctgccgtacgatgtggtcaaccagccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgttatcttc
gccgaccagttgatgtacaccggtttcgcctactcgaccatttctggcgtttccatcggt
gtgaatgacttcgtcatccctgatgaaaaagcacgcatcattggcagcgccactgatgaa
gtgaaggaaatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtcatcgacttgtggtccaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcattgaccgcgagggcaaagaagtcgagcaagagtccttcaac
tcgatgtacatgatggctgactccggtgcgcggggttccgcagcacagatccgtcagctg
gccggtatgcgtggcctgatggccaagccggacggctcgatcatcgagacgccgatcact
gcgaacttccgtgaaggtctgagcgtactccagtacttcatctcgactcacggtgctcgt
aaaggtctggcggataccgcattgaagactgcgaactccggttacctgacccgtcgtctg
gtggacgttgcgcaagacctggttgtaaccgagatcgattgcggtaccgaccacggcctg
ctgatgactccgcacatcgaaggcggtgacgtcgtggagccgttgggtgagcgtgtactg
ggccgtgtcatcgcccgtgacgtgttcaagccaggcaccgaggacgtcatcgttcctgcc
ggtaccctggtcgacgagcagtgggtcgagttcatcgagctgaacagcatcgacgaagtt
gtcgtacgttcgccgatcaactgcgaaacccgctacggtatctgtgccaagtgctacggt
cgtgacctggcccgcggtcatcaggtgaacatcggtgaagctgtcggcgttatcgctgcc
cagtcgatcggtgagcctggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccggacttcggctgccgacagcgtccaggtgaagaacggcggtatggtgcgtctg
cacaacctgaagcaggtcgagcgtgccgatggcaacctggttgccgtatcgcgttccggt
gagctggccattgccgatgaattcggccgtgagcgcgagcgttacaagctgccttacggt
gcggtgatttcggtcaaggaaggtgacaaggtcgaagctggcgccatcgtcgccaagtgg
gatccgcacacccacccgatcgttaccgagctgaaaggtaccgtgaccttcgtgggcatg
gaagaaaacatcaccatcaagcgccagaccgacgagctgaccggcctgaccaacatcgaa
gtgctggacgtcaaggatcgccctgccgcaggcaaggaaatccgtccggcaatcaagatg
gtcgacgccaatggcaaggatctgtacctgccaggtaccgacgtacctgcacagtacttc
ctgccagcgaacgccttggttggtgttgctgacggtgcacagatcggcgttggtgacgtt
attgcgcgtatcccgcaagaaacgtcgaagacccgtgacatcaccggtggtctgccgcgt
gttgccgacctgttcgaagcgcgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgcattcggcaaggagaccaaaggcaagcgtcgcctggtcattaccccgacc
gacggtagcgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggtgaagttatctccgacggcccgagcgatccgcacgacatc
ctgcgtctgctgggtgtgagcgcgctggcgaaatacatcgtcaacgagatccaggacgtt
taccgtctgcaaggcgttaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaggtcgagatctccgagtcgggcgattccagcttcatcaagggcgaccagatg
gaactgactcaggtgctggtcgagaacgagcgtctcgccgccgatgacaagttcgtctcg
aagttcacccgtgtgttgctgggtatcaccaaggcgtcgctttcgaccgagtcgttcatc
tccgcggcttccttccaggaaaccacccgcgtgctgaccgaagcggccgtaaccggcaag
cgcgattacctgcgcggcctgaaagagaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcctaccacagcgagcgtaagcgtcgccgtgaagccgacaaaccgctgcgc
gtaagtgccagtgaggtggaagccgcactgaccgaagcgctgaattccagcggtaactaa
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