Pectobacterium aroidearum: I2D83_04880
Help
Entry
I2D83_04880 CDS
T07244
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pari
Pectobacterium aroidearum
Brite
KEGG Orthology (KO) [BR:
pari00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pari03009
]
I2D83_04880 (rlmD)
Enzymes [BR:
pari01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
I2D83_04880 (rlmD)
Ribosome biogenesis [BR:
pari03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
I2D83_04880 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
PCMT
RrnaAD
MTS
Methyltransf_11
TRM5-TYW2_MTfase
Methyltr_RsmB-F
Cons_hypoth95
Methyltransf_4
FtsJ
Ubie_methyltran
Methyltransf_23
PDGF
Methyltransf_15
Methyltransf_32
CMAS
DUF4853
Motif
Other DBs
NCBI-ProteinID:
QPI43956
LinkDB
All DBs
Position
1090831..1092180
Genome browser
AA seq
449 aa
AA seq
DB search
MAQFYSPNRRVTTRKAIPAKNLTVTVTSLDPFGQGVARHEGKTVFVTGVLPGEQAEVQLT
EDKRQFSHAKLKRLLTHSPQRVEPRCPHFTRCGGCQQQHADITLQQSSKTAALMRLMTRE
TGAELPDASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQSNSHDLVDIKACPVLRPEL
EALLQPLRDCLSRLKAVKRLGHVELVQAENGPLLVLRHLDPLHPADEQALRDFAEQQGVS
VYLAPDADSLTCLHGDEPVYHVAGLTLAFSPRDFIQVNDAVNQQMVAQALAWLDVQPQDR
ILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQ
QPWAAQGFDKILLDPARAGAAGVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGFTLV
NVAMLDMFPHTGHLESMALFLHDTGTRKA
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctccaaaccggcgtgtgacgacccggaaagcgattcctgctaag
aacctcactgttacggtcacgtcacttgacccgtttgggcagggagtggcgcgtcacgaa
ggtaagacggtgtttgtcacgggtgtactgccgggagagcaggctgaggtccaactgacg
gaagataaacgtcagttttcgcatgcaaagcttaaacgcctgctgacgcacagcccacag
cgcgttgaaccgcggtgccctcactttacccgctgcggcggctgccagcagcagcacgcg
gacatcacgctgcaacagagcagcaaaacggccgcattaatgcgtctgatgacgcgggaa
acaggcgctgagctgcctgacgcgtctctgattgctggcacaccttatgcctatcggagg
cgcgcgcggcttgcgttatactttcaggcaaaagagcagcgtctgttgatgggctatcgg
cagtcaaattctcacgatttggtggatatcaaagcttgtccggtgctgcgccctgagctt
gaagcgctgctgcaaccgctgcgcgactgcctgagccgattaaaggcggtgaagcgtctt
gggcatgtggaactggtgcaggcggaaaacggtccgctgctggtgctgaggcaccttgat
ccgctgcatccagcggatgagcaagcgctgcgagattttgccgagcagcagggcgtttcg
gtttatctggcgccggatgccgattcgctgacgtgtctgcacggcgacgagccggtttat
cacgttgccggactgacgctggcctttagcccgcgcgattttattcaggtcaatgatgcg
gtcaaccagcagatggttgctcaggcgctggcgtggctggatgtgcaaccgcaggataga
atattagatctgttttgcggtatgggtaacttcacgctaccgctggcacagcgcgccgcc
agcgtcgttggcgttgaaggggtaaccgcgctggtagagaaagggcgcgagaatgcccga
cgcaatgcgttgtccaatgtcacattttttcaccaaaatcttgaagatgacgtcacacag
cagccgtgggcggcccagggttttgataagatattacttgatccggcacgtgcgggcgcg
gcaggcgtgatggagcagataacccgactggcacctaaacgggtggtgtatgtttcctgt
aatgccacgacgctagcgcgcgacagcaaagtattactggcggcaggttttacgctggtg
aatgtcgcgatgctggatatgtttccacataccgggcaccttgaatcgatggcactgttt
ttgcacgataccggcacgcgaaaggcgtaa
DBGET
integrated database retrieval system
