Pectobacterium aroidearum: I2D83_07115
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Entry
I2D83_07115 CDS
T07244
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pari
Pectobacterium aroidearum
Pathway
pari00040
Pentose and glucuronate interconversions
pari01100
Metabolic pathways
pari02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pari00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
I2D83_07115
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
I2D83_07115
Enzymes [BR:
pari01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
I2D83_07115
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Glyco_hydro_43
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-ProteinID:
QPI44341
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Position
1598016..1599584
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AA seq
522 aa
AA seq
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MFRAVIGTGRLRTCAVAIAFSGLVLSGCDNSQKPVEEAAPPDLQVKTAPFGWAAQYQNTD
GKFYATTGGEGAHENSIYVVTSRQELKDALNNIRSPLYIAGDADAELKAKLEPKIIYWQG
TIRGDDLGNGRYADAEYYKTKPNKTTFDFDLYVKAFDQDYMAQLKATADAGGSDAAAASA
ELSLLKKQNGQRSQYANNQKAQIQFQVPPNTTILGVGSEAKLVEGYLSLNTLSHTFGKTD
NSNIIIRNITFQAPRDFAPAWDASDGDKGNWNARYDAVSINASKNVWVDHCTFTDGEHPD
YQEPVLFGKHIQRHDGLLDIEDAADYLTISYNIFAQHDKTVLIGSGDGDKGEYRITFEGN
LWDNSVQRSPRVRFGQVHLLNNYHRGATDTNYPILYAVGMGFDSSILSESNVFNFQGGGA
DEKLIIGAYKGSKFKDNGSWFNGNPASNLNQIALDKCSALQETEKAAAANSGKAVPAWAL
ETCTNELEWSPPYAYSAGKSLAVVEKYVLENAGAGKLEIALP
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtttagagcggttattgggactggtcgtttacgcacctgtgcggtagctattgccttt
tctgggctcgtgctttccgggtgtgataatagtcagaaaccagtggaagaagcggctccg
ccagatttgcaggtgaaaacggcaccgtttggctgggctgcgcaatatcagaatacggat
ggtaagttttatgcaacgacggggggcgaaggcgcacatgaaaatagcatttatgtcgtg
accagccgccaggaattaaaagatgcgttaaataatatacgcagtcccctttatatcgca
ggcgatgccgatgcggagttgaaggcaaagttagagcctaaaattatctattggcaaggc
actatccgcggcgatgatttaggtaatgggcgctatgcggatgctgagtattataaaacc
aagccgaataaaacaacgtttgattttgatttatatgtcaaagcgttcgatcaggattat
atggcgcagttgaaagcgacggcggatgcgggtggcagcgatgcggcggcggctagcgcg
gaactgagcctgcttaagaaacaaaatggtcaacgctcgcagtatgccaacaaccagaag
gcgcagattcaatttcaggtaccgccgaataccacgattttaggcgtaggtagcgaagcg
aaactggtggaaggttatttatccctcaacaccttaagtcatacgtttggcaaaactgat
aacagcaacatcattatccgtaatattacctttcaggcgccgcgcgactttgccccagca
tgggatgccagcgacggcgataaagggaactggaatgcccgttatgatgccgtctcgatt
aatgccagcaaaaatgtttgggttgatcactgcacctttacggatggtgaacatcctgac
tatcaggaaccggtgttatttggcaaacatatccaacgccatgatggcctgctggatata
gaagacgctgccgattatctgacgatttcctacaacattttcgctcagcatgacaaaacg
gtattaattggctccggtgacggtgataaaggggaatatcgaatcacttttgaagggaat
ttatgggacaacagcgtgcagcgttctccgcgagtgcgttttggtcaggtgcatttgctc
aataattaccatcgcggggcaacggacacgaattaccccattctgtatgccgttgggatg
ggattcgactcctccattctttccgaaagtaacgtgtttaatttccagggcgggggagcg
gatgaaaagttgattatcggcgcctacaagggaagcaaatttaaagacaacggctcctgg
ttcaatggcaatccggcaagcaatttgaatcaaatcgcattagacaaatgcagtgcattg
caagaaaccgagaaggccgctgccgcaaactcagggaaagcagtacccgcatgggcgctg
gagacctgcaccaatgaattggaatggagcccaccttatgcgtacagcgcagggaaatcc
ctcgccgtcgttgagaaatatgttctggaaaatgccggtgcgggaaaactggagattgcc
ctgccgtag
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