Pectobacterium aroidearum: I2D83_10525
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Entry
I2D83_10525 CDS
T07244
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pari
Pectobacterium aroidearum
Brite
KEGG Orthology (KO) [BR:
pari00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pari03016
]
I2D83_10525 (rnd)
Enzymes [BR:
pari01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
I2D83_10525 (rnd)
Transfer RNA biogenesis [BR:
pari03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
I2D83_10525 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
QPI44965
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All DBs
Position
2346789..2347913
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AA seq
374 aa
AA seq
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MNYQLITSDIGLQQVCAQARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTI
TDWAPFQALLRDDQVTKFLHAGSEDLEVFLNAFGTLPVPFIDTQILAAFLGKPLSYGFAA
LVADYMGVTLDKSESRTDWLARPLSEKQCDYAAADVFYLLPMAAQLVADTEAAGWMNAAL
DECLLLCQRKQDILAPALAYREFGNAWQLRGRHLACLQRLAEWRLRKARERDSAVNFVVR
EENLLQVARCLPTSLGELSSLGLSGPEIRYHGKTLLDCVAQTDGISDADCPPPVINLIDY
PGYKKAFKDIKALVQRVSEQSGLSAELLASRRQINRLLNWHWKLNGQDAGTPEMLSGWRG
QLYGDELRDIVQGY
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgatcacttccgacatcgggttacaacaggtttgcgcccaggcgcga
cgttttccgcaggtggcattggacacggagttcgtcagaacccgcacgtattacccgcaa
ttagggttgattcaattgtatgacggcgaacagctttcacttattgacccgctaacgatt
accgactgggctccttttcaggcgttactgcgtgatgaccaggtcaccaaattcctgcat
gcgggcagcgaagatctggaagtgtttctcaatgcgtttggaacactgccggtgccgttc
attgacacacagattctggccgcatttttagggaagccgctttcctatggcttcgctgcg
ctggtggcggactatatgggcgtgacgctggataaaagcgagtcgagaacggactggctt
gctcgcccgttgagcgaaaaacagtgtgattacgcggccgccgatgtgttctatctgttg
ccaatggccgcgcagttagtggcggatacggaagccgcagggtggatgaacgctgcgttg
gacgaatgtctcctgctttgtcagcgtaaacaggatattttggcaccggcgctcgcctat
cgcgaatttggcaatgcctggcaactgcgtggccggcatctggcttgcctacagcgtctg
gctgagtggcgcttgcgtaaagcgcgtgagcgagacagtgcggtgaattttgtcgtacgt
gaagagaacctgctgcaggtggcgcgttgtttgccaacttcgctgggtgaactgagttca
ctggggctgagcggcccggaaattcgctaccacgggaaaacgctgctggactgtgttgca
caaacggacggtattagtgacgcggattgcccgccaccggtcattaatttgatcgactat
cccggctataaaaaagcgtttaaagatatcaaagcgctggtacagcgcgtgagcgaacag
agtggattatccgccgagttattggcatcacgtcgtcaaattaaccgtctgctgaactgg
cactggaaattaaatgggcaagacgcagggaccccggaaatgttatctggctggcgcggt
cagttatatggcgatgaactacgtgacattgtgcaaggctattaa
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