Pectobacterium aroidearum: I2D83_10945
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Entry
I2D83_10945 CDS
T07244
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pari
Pectobacterium aroidearum
Brite
KEGG Orthology (KO) [BR:
pari00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pari03032
]
I2D83_10945 (topA)
03400 DNA repair and recombination proteins [BR:
pari03400
]
I2D83_10945 (topA)
Enzymes [BR:
pari01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
I2D83_10945 (topA)
DNA replication proteins [BR:
pari03032
]
Prokaryotic type
DNA Topoisomerases
I2D83_10945 (topA)
DNA repair and recombination proteins [BR:
pari03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
I2D83_10945 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QPI45042
LinkDB
All DBs
Position
2430746..2433346
Genome browser
AA seq
866 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHVRDLPTSGSVSKKSADSTTKDKTKKKV
KKDEKSALVNRMGVDPYHGWQANYEILPGKEKVVSELKTLAENADHIYLATDLDREGEAI
AWHLREIIGGEDERFSRVVFNEITKNAIKQAFEKPDTLNIDRVNAQQARRFMDRVVGYMV
SPLLWKKIARGLSAGRVQSVAVRLIVDREREIKAFVPEEYWELHADLLAGSDIQLQMQVT
HHSGKPFKPVNKEQTQAAVSLLENARYVVADREDKPTSSKPGAPFITSTLQQAASTRLGF
GVKKTMMMAQRLYEAGYITYMRTDSTNLSQDALTMVRGYIGEEFGKRYLPESANLYSSKE
NSQEAHEAIRPSDVGVLADSLKDMETDAQKLYQLIWRQFVACQMTPAQYDSTTLIVEAAD
YQLRAKGRTLRFDGWTKVMPALRKNDEDRTLPTVAVGEALSLQKLLPGQHFTKPPARYSD
ASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMN
YDFTARMESRLDQVANNQAEWKAVLDEFFNEFSQQLEKAEQDPEEGGMRPNAMVLTSIDC
PTCSRKMGIRTASTGVFLGCSGYALSPKERCKTTINLIPENEVLNVLEGDDAETNALRAR
RRCEKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIETGEFRIKGYDGPIVECEKCGSEMH
LKMGRFGKYMACTSETCTNTRKILRNGDVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGV
FLAANTFPKSRETRAPLVEELVRFKDRLPEKLRYLAEAPVVDKDGNKTQVRFSRKTKQQY
VSSEKDGKATGWSAFYIDGKWVEGKK
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgttatcgtcgagtccccggcaaaagccaaaacgatcaataagtat
ttaggcaatgactacgtggtgaaatccagcgtcggtcatgtacgcgatttgccgacgagt
ggctcagtcagtaaaaagagcgcggactcaacgactaaagataaaacgaaaaagaaagtc
aaaaaggatgaaaaatccgcgctggttaatcgtatgggcgtcgacccttaccatggctgg
caagccaactacgaaatactgccgggtaaggagaaggttgtctccgaattaaaaacgctg
gcggaaaatgccgaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccatt
gcctggcacctgcgggaaatcattggtggtgaagatgagcgtttcagtcgcgtggtgttt
aacgaaatcacgaaaaatgccattaaacaggcgtttgaaaagccagacacgttgaatatt
gatcgcgttaatgcacagcaggcgcgtcggtttatggatcgcgtggtgggttacatggta
tccccgctgctgtggaaaaaaatcgcccgcggcctgtctgccggacgcgtgcagtcggtt
gcggttcgcctgattgtcgatcgcgaacgcgagatcaaggcgtttgtgccggaagaatat
tgggaactgcacgccgatttgctggcaggcagcgatattcaactgcaaatgcaggtaacg
caccatagcggcaagccgtttaaaccggttaataaagaacaaacacaggctgcggttagc
ctgcttgaaaacgcccgctatgtggttgccgatcgtgaagataaaccgaccagcagcaaa
ccgggcgcgccgttcattacctcaacgctgcaacaggccgccagtacacgccttggcttt
ggcgtgaaaaaaaccatgatgatggcacagcgtctgtatgaagcgggctacatcacttac
atgcgtactgactcaacgaacctcagtcaggatgccttgacgatggtgcgtggctatatt
ggcgaagaattcggcaaacgttatctgcccgaatctgcgaacctttacagcagcaaagaa
aactctcaagaagcgcacgaagcaattcgtccttccgatgttggcgtgctggccgacagc
ctgaaagatatggaaaccgatgcgcagaagttgtatcagttgatttggcgtcagttcgtc
gcctgtcaaatgacacctgcgcaatacgattccaccacgttaatcgtggaagcggccgat
tatcaactgcgtgcgaaaggccgtacgctgcgtttcgatggttggacgaaagtcatgcct
gcgctgcgtaaaaatgatgaagatcgcacgctgccaaccgtggcggtgggcgaagcgctg
tcactgcagaaactgctgcctggacaacacttcactaaaccgcctgcacgttacagcgat
gcatcactggttaaagaactggaaaaacgcggtattggtcgaccttctacctacgcgtct
attatttcaaccattcaggatcgcggctatgttcgagtggagaaccgccgtttctacgcc
gagaagatgggcgaaatcgttaccgatcggctggaagaaaacttccgcgaattgatgaat
tacgatttcaccgcgcggatggaaagccgtctcgatcaggtcgccaataatcaggcggaa
tggaaagcggtgttggatgagttcttcaacgaattcagccagcagttggaaaaggcagag
caggatccggaagaaggcggcatgcgtcccaatgcgatggtgttgaccagcattgactgt
ccgacgtgctctcgcaaaatggggattcgtactgccagcaccggggtgtttctgggctgt
tccggttatgcactgtcgccgaaagagcgctgcaaaaccacgatcaacctgataccggaa
aacgaagtgctgaacgtgttggaaggcgatgatgctgaaaccaacgcgctgcgtgcccgt
cgtcgctgtgaaaaatgtggtacggcgatggacagctacctgattgataatcagcgcaag
ctgcacgtttgcgggaataacccagcctgtgacgggtatgagatcgaaaccggcgagttc
cgcatcaaaggctatgatggcccgattgttgagtgcgaaaagtgtggttccgagatgcat
ctcaaaatgggacgcttcggtaagtacatggcgtgcaccagcgagacgtgtactaacacg
cgtaagatcttgcgtaatggcgatgttgcgccaccgaaggaagatccggtgccgttgcct
gagctgccttgcgagaagtccgatgcttatttcgtgttgcgtgacggtgcagcaggggtg
ttccttgccgctaatacgttcccgaaatctcgtgaaacgcgggcaccgctggtagaagaa
ttagtgcgcttcaaggatcgtctgccggaaaaactgcgctatttggcggaagcgccagtg
gtcgataaagatggcaacaagacgcaggtgcgtttcagccgtaagaccaaacagcaatat
gtctcgtcagaaaaagacggcaaggcaacgggctggtcagcgttttatatcgatggcaaa
tgggttgaaggcaagaagtaa
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