Pectobacterium aroidearum: I2D83_13230
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Entry
I2D83_13230 CDS
T07244
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pari
Pectobacterium aroidearum
Pathway
pari03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pari00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I2D83_13230 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pari03400
]
I2D83_13230 (mfd)
Enzymes [BR:
pari01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I2D83_13230 (mfd)
DNA repair and recombination proteins [BR:
pari03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I2D83_13230 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QPI41460
LinkDB
All DBs
Position
2959904..2963356
Genome browser
AA seq
1150 aa
AA seq
DB search
MMPENYRYSLPSKAGEQRLLGQLTGAACAVECAEIIERHAGLVVLIAPDMQNALRLRDEI
QQFTDQHVTTLPDWETLPYDSFSPHQEIISTRLSTLYQLPNMTRGVLILPVNTLMQRVCP
HSFLHGHALVLKKGQRLSRDKLRSQLEQAGYRSVDQVMEHGEYATRGALLDLFPMGSEEP
YRIDFFDDEIDSLRLFDVDTQRTLNEVPHINLLPAHEFPTDKTAIELFRSQWREQFEVRR
DAEHIYQQVSKGVWPAGIEYWQPLFFSEPLPSLFSYFPNNTLIVNTGNIEQSAERFWQDI
QQRFESRRVDPMRPLLPSDSLWLRVEGLFTELKAWPRVQLRTDTLPEKAANVNLAYLPLP
EMAIQHQQKSPLDALRRFIEQSEGQVIFSVESEGRRETLQELLARIKLNPTLISTLEQAQ
ERGTYLIIGASEHGFIDTLRQRALICESDLLGERVSRRRQDNRRTINTDTLIRNLAELRP
GQPVVHLEHGVGRYAGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGADEN
APLHKLGGDAWSRARQKAAERVRDVAAELLDIYAQRAAKSGFAFKHDKTQYQLFCESFPF
ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTT
LLAQQHFDNFRDRFANWPVKIEMISRFRSAREQTQVLEETQEGKVDILIGTHKLLQSDVR
WRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATP
PARRLAVKTFVREYDNLVVREAILREILRGGQVYYLYNDVENIEKATQRLAELVPEARIA
IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL
RGRVGRSHHQAYAYLLTPNPKAMSTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL
GEDQSGQMTSVGFSLYMELLESAVDALKAGREPSLEDLINSQTDVELRLPALLPDDFIPD
VNTRLSLYKRIASAKTSDELDELKVELIDRFGLLPDASRYLLQIAALRQQAQALGIRRIE
GNEKGGFIEFSEQNRVDPSHLIGLLQRDPGTYRLDGPTRLKFMKDLSDRPQRIEFIGSLL
GNMAQHTLAA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctgaaaattaccgttattcgctgccatccaaagccggtgagcagcgcctgctg
ggccagttaaccggcgctgcctgcgccgttgaatgtgcagagattattgaacgccacgcc
gggctggtggtgcttatcgctcccgatatgcaaaatgccctgcgcttacgcgatgagatt
cagcaatttaccgaccagcacgtcaccacgctgcctgactgggaaacgctgccctacgat
agtttttctccgcatcaggagattatttcgactcgcctttccacgctctaccaactcccc
aacatgacgcgcggtgttctgattctgccggttaacacgctcatgcagcgcgtctgtccg
cacagtttcctgcacggccatgcgttggtgttgaaaaaaggccagcgcctctcgcgcgat
aagctgcgttcgcaattggagcaggcgggctatcgcagtgtcgatcaggtcatggaacac
ggtgaatatgccacgcgcggcgcgttgttagatctgttcccgatggggagcgaagaaccc
tatcgtatcgatttctttgacgacgagatcgacagtctgcgtctgttcgatgtggatacg
cagcgcacgctgaatgaagtgccgcacattaatctgctgcctgcgcacgagttcccaacg
gataaaaccgccatcgaactttttcgcagccagtggcgcgaacagttcgaggtacggcgc
gatgccgagcacatctaccaacaggtcagcaaaggcgtctggcccgcagggatcgaatac
tggcagccgttattcttcagtgagccgctgccatcgctgttcagttacttccctaataac
acgctgatcgtcaacacggggaatatcgaacagagcgccgagcgcttctggcaggatatt
cagcagcgttttgaaagccgccgtgtcgatcccatgcgcccattactgccgtcagattca
ctctggctgcgggtagaaggtctgttcacggagctgaaagcgtggccgcgcgtgcagttg
agaaccgatacattgccggaaaaagccgccaacgtgaatctggcctatctgccattgcca
gagatggcgattcagcatcagcagaaatccccgctggatgcactgcgccgcttcatcgaa
cagtccgaaggtcaggtcattttctccgtcgagagcgaaggccgtcgcgaaacgctacaa
gagctattggcacgcatcaaactgaatcctacgctcatcagcacgctggaacaggctcag
gagcgtggcacctacctgatcatcggtgccagcgagcacggttttatcgacacgctgcgc
cagcgcgccttaatctgcgaaagcgatctgctgggagaacgcgttagccgtcgtcgtcag
gataatcgccgcacgatcaataccgatacgctgatccgcaatctggcggaactgcgaccg
gggcagcccgtcgtccatcttgaacacggcgttggtcgctatgctgggctgacaacgctg
gaagccggcggcatcaaggctgaatacctgattttgacctatgcgggcgaagacaaactg
tacgtccccgtttcttcattgcatttgatcagccgctacgcaggcggtgccgatgaaaat
gcaccgctgcataaactgggtggcgatgcgtggtcacgcgcacggcaaaaagcggcggaa
agagtacgtgatgtcgccgccgaactgctggatatttatgcccagcgcgcagcgaaaagc
ggttttgcctttaaacatgacaaaacgcagtatcagcttttctgcgaaagcttccccttt
gaaacgacccccgatcaggcgcaggccatcaacgccgtgctgagcgacatgtgccagccg
ctggcgatggatcgtctggtgtgtggcgatgtcggttttggtaaaaccgaagtggcgatg
cgcgccgcgtttctggcggttgaaaaccacaagcaggttgccgttctggtgccaacgacg
ctgttggctcaacagcattttgacaacttccgcgatcgctttgccaactggcccgtgaag
attgaaatgatctctcgcttccgcagtgcgcgtgaacaaactcaggtgctggaggaaaca
caggaaggcaaggtcgatattctgatcggcacccataagctgttgcagagcgacgtgcgc
tggcgcgatttagggctgttgattgtggacgaagaacaccgcttcggcgtgcgtcacaaa
gagcgcatcaaagcgatgcgggcggatgtcgatatcctgacgctaaccgctacgccgatt
ccgcgcacgctcaacatggcgatgagcgggatgcgcgatctgtcgatcatcgccacgccc
cctgcccgtcgtttagcggtaaaaacgttcgtgcgcgaatatgacaatctggtggtacgc
gaagccatcctgcgtgaaatcctgcgcggcgggcaggtgtattacctctataacgatgtc
gaaaatatcgaaaaagccactcagcgactggcggaactggtgccggaagcacgtatcgct
atcgggcacggccagatgcgtgaacgtgagctggaacgggtcatgaacgacttccaccac
cagcgttttaacgtgctggtgtgtaccaccatcatcgaaaccgggatcgacatcccgagt
gccaacaccatcatcatcgagcgtgccgatcacttcggtctggcgcagttacaccagttg
cgtggccgcgtcgggcgttcccatcatcaggcttatgcctacctgctgacgccgaacccc
aaagcgatgagtaccgatgcgcagaaacgtctggaagcgatcgcttcgctggaagacctc
ggcgcaggctttgcgctggcaacgcacgatctggaaatccgcggcgcgggcgagctgctt
ggagaagaccagagcggacagatgaccagcgtcggtttctcgctgtatatggaactgctg
gaaagcgctgtcgatgctctgaaagcgggtcgggagccgtcgctggaagatctgatcaac
agccagaccgacgtcgaactacggttaccggccctgctacccgatgatttcattcccgac
gtcaatacacgcctgtcgttatacaaacgtatcgccagtgcgaaaaccagcgacgagctg
gatgagctgaaggtcgagctgatcgatcgtttcggcctcctgcccgatgcaagccgctat
ctgttgcagattgctgccctgcgccagcaggcgcaagcgctgggtattcgtcgtattgaa
ggcaatgagaaaggtggatttatcgaattcagcgagcaaaatcgcgtcgatccctctcac
ctcatcggcttgttacagcgcgacccgggcacctaccgtcttgatggcccaacccgcctg
aaatttatgaaggatttaagcgatcgcccgcagcgcattgagtttatcggttcgctgctg
gggaacatggcgcagcatacgctggcggcgtaa
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integrated database retrieval system
