Pectobacterium aroidearum: I2D83_18695
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Entry
I2D83_18695 CDS
T07244
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pari
Pectobacterium aroidearum
Pathway
pari03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pari00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I2D83_18695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pari03019
]
I2D83_18695
03009 Ribosome biogenesis [BR:
pari03009
]
I2D83_18695
Enzymes [BR:
pari01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I2D83_18695
Messenger RNA biogenesis [BR:
pari03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I2D83_18695
Ribosome biogenesis [BR:
pari03009
]
Prokaryotic type
rRNA helicases
I2D83_18695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QPI42433
LinkDB
All DBs
Position
complement(4194410..4196299)
Genome browser
AA seq
629 aa
AA seq
DB search
MTDLVTSFADLGLNTSILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNLKPELKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLR
ALRQGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVQGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLTKLQPQEELDVET
LAAALLKMAQGERPLILPPDPVFRPRREFRDRDDSRSDSRGDRRRDPRDSRESRDGDRPQ
RRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG
MPGDLLSHFTRTRILNKPMNMQLLGDAQPHERRGGGRPGGERRDGAAPRRSFGGGERREG
NGGERRERSFNRDNRDGASRAPRRRPADA
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttagtaacttcttttgccgatttggggttgaacacctctatccttaatgcc
ctgactgatttgggctatgaaaaaccgtctccgattcaggcggaatgtattcctcacctg
ctgaacggtcgcgatgtgctgggtatggcacagaccggtagcggtaaaacagcagcgttc
tctctgccattactgaacaatctgaaacctgagcttaaagcaccacagattctggtgctg
gcaccgacccgtgagctggcggtgcaggtagcagaggcctgcaatgatttctccaaacat
atgcacggcgttaacgtcgtcgcactgtacggcggccaacgctatgacgtgcaactgcgc
gcgctgcgccagggtgcgcagattgtcgtgggtacgccgggtcgtctgctggatcacctg
aaacgcggtacgctggatctgtccaacctgagtggtctggtactggacgaagccgatgaa
atgctgcgtatgggcttcatcgaagatgttgaaaacatcatggctcagatccctgctgaa
catcagactgcgctgttctctgcgaccatgcctgaagcgattcgccgcattacgcgccgt
ttcatgaaagatccgcaggaagttcgcattcaatccagcattaccacgcgtccagacatc
agccagagctactggacggtgcagggtatgcgtaaaaatgaagcgctggtgcgtttcctg
gaagcagaagattttgatgcggcgattattttcgttcgtaccaaaaatgcaacgctggaa
gtggctgaagccctggaacgtagcggctacaacagcgccgcgctgaacggtgatatgaac
caggcgctgcgtgagcaaacgctggagcgtctgaaagatggccgtcttgatatcctgatc
gcgaccgacgttgcggcgcgtggtctggacgttgaacgtatcagcctggtcgtcaactac
gatatcccgatggatgccgagtcttacgttcaccgtattggccgtaccggtcgtgcgggt
cgtgcgggtcgtgctctgctgtttgttgagaaccgtgaacgccgcctgctgcgcaacgtt
gagcgcacaatgaagctgacgattcctgaagtggaattgccaaatgcagaattgctgggt
caacgccgtctggctaagtttgctgctaaagtacagcagcagttggaaagtagcgatctg
gatatgtaccgcgcgctgctgactaaactgcaaccgcaggaagagctggatgtcgaaacg
ctggctgcggcgttgctgaaaatggcgcagggtgaacgtcctctgattctgccaccggat
cctgtgttccgtcctcgtcgcgaattccgcgatcgtgatgattcccgtagtgattcacgt
ggcgatcgtcgccgcgatccgcgcgattctcgcgaaagccgtgacggtgatcgtccgcaa
cgccgtgagcgtcgtgatgcaggcgaaatggaactgtatcgtatcgaagtgggccgtgat
gacggtgttgaagttcgtcacattgttggcgcaattgccaacgaaggcgatatcagcagc
cgctacatcggtaacatcaagctgttcgcgtctcactcgacgattgaactgccgaaaggt
atgccgggtgacctgttatcacactttacccgcacgcgtattctgaacaaaccgatgaac
atgcaattgctgggtgatgctcagccgcatgaacgtcgtggcggtggccgtcctggtggc
gaacgtcgtgatggcgctgctccacgtcgctctttcggcggtggtgaacgtcgtgaaggt
aacggtggtgagcgtcgcgagcgttctttcaaccgtgataaccgtgacggtgcttcacgc
gcgccacgtcgtcgtcctgctgacgcgtaa
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