Pectobacterium aroidearum: I2D83_19735
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Entry
I2D83_19735 CDS
T07244
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pari
Pectobacterium aroidearum
Brite
KEGG Orthology (KO) [BR:
pari00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pari03016
]
I2D83_19735
Enzymes [BR:
pari01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
I2D83_19735
Transfer RNA biogenesis [BR:
pari03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
I2D83_19735
Prokaryotic type
tRNA splicing ligases
I2D83_19735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QPI45348
LinkDB
All DBs
Position
complement(4435328..4436554)
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AA seq
408 aa
AA seq
DB search
MKTQDYDMMSPVNSAPVKMWTQGVPVEPEARDQLLNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTRGAIIPAAVGVDIGCGMIAVRTSLVASDLPDNLMGLRSAIEQAVPHGRSVTRS
KRDVGSWQNPPQTVDAHWSLLEPRFKRLTDKYPQLLKTNNYQHLGTLGTGNHFIEICLDE
VDRVWVMLHSGSRGVGNAIGSLFIKLAQEDMQQHIANLPDRNLAYFEEGSLHFDDYIEAV
EWAQDFARHNREVMMSHTLAALSRIVTKPFTTQQEGVNCHHNYVQRETHFGESVLITRKG
AVSAQKGQMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRTAAKKRFTVEDQIRA
TAHVECRKDSDVIDEIPMAYKDIDKVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgcaggattacgacatgatgtcacccgtgaatagcgcaccggtaaaaatgtgg
acgcagggcgtgcctgtggaaccggaagctcgcgaccaactgctgaacacagccaaaatg
ccgttcatttttaaacatctggcggtgatgccggatgtgcatctgggaaaaggatcgacg
attggtagcgtgattcccacgcgtggcgcgattatcccggcggcagttggtgtggatatc
ggttgcgggatgattgcggtgcgtacgtcactggttgccagcgacctgccggataatctg
atggggctgcgtagcgcgattgaacaggcggtgccgcacggacgtagcgtaacgcgctcc
aagcgtgatgttggttcctggcagaacccgccgcaaacggtggatgcgcactggtcgctg
ctggagccgcgttttaaacgtttgacggataaatacccgcagttgctgaaaaccaacaac
taccagcatttgggaacgctaggaacgggtaaccactttattgaaatctgtctggatgag
gtcgatcgcgtgtgggtgatgttgcacagcgggtcgcgtggtgtggggaatgcgattggg
tcgctgttcatcaagctggcgcaggaagatatgcagcagcacattgcgaatctaccggac
cgtaatctggcgtatttcgaggaaggaagcctgcactttgacgattacatcgaagcggtg
gagtgggcgcaggattttgctcgtcataaccgtgaagtgatgatgtcgcatacgctggcg
gcgctgtctcgtattgtgacgaagccgtttaccactcagcaggaaggcgtgaactgccac
cataactacgtgcagcgcgaaacgcactttggtgaatcggtgctgatcacccgtaaaggg
gcggtgtcggcgcagaaaggtcagatggggatcattccggggtcaatgggggcgaagagc
tttatcgtacgtggattggggaacgaagagagcttctgttcctgtagccacggtgcggga
agaaccatgagccgtactgccgcgaaaaaacgtttcaccgtggaagatcagattcgtgcg
accgcacacgtcgagtgcagaaaagacagcgacgttatcgatgaaatcccgatggcgtac
aaagatatcgataaagtgatggcggcacagtcatcgctggtggaaattgtgcacacgctg
cgtcaggtggtttgtgtgaaaggataa
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