Pectobacterium aroidearum: I2D83_20600
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Entry
I2D83_20600 CDS
T07244
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
pari
Pectobacterium aroidearum
Brite
KEGG Orthology (KO) [BR:
pari00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pari03019
]
I2D83_20600 (csrD)
Messenger RNA biogenesis [BR:
pari03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
I2D83_20600 (csrD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Questin_oxidase
Sigma_reg_N
Motif
Other DBs
NCBI-ProteinID:
QPI42783
LinkDB
All DBs
Position
complement(4621377..4623314)
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AA seq
645 aa
AA seq
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MGFTTRFSILVVLLTVLAIFLMLFSSIFSLCYYSQLRTEQQLREVTASIDQALLVQSPEN
IQYWLPSMMKTAGIVVLDIQDNDSTLYSIQLPEAGWERTHLYHEVEFPLMHHLNMTIAIR
YVDPLIGLPRFVVSMLSVLLAAGLMLLMLYFSIRWLRRQAAGQEELEERAQRILKGERES
VMQGSVREWPVNTSGALDQLLSDLVEAREERGRVDTLIRAFAAQDAETGLSNRLFFDNQL
TTQLEDGEEVGTHGVVMMIRVPDFETLQETHGDSSALQEYRFTLINLLSTFVMRYPSALL
ARYFSSDFTVLLPHSTLKEANAIATQLVKSIDILPACPLIDREEVLHIGICAYRGGQSAE
QVMESVEDATRNAVLQGGNSWCVFDRQVPEKGRGSVKWRTLLEQTLARGGPRLYQKPAVT
KEGVVHHREMMSRIYDGEQELLAAEYMPLVQQLGLAASYDRQLVARIIDLSANWPGETLA
LPVSVDSLLQKPFLRWLKEVLLQCPKTQRQRILFELAEADVCQYIGRLRPVLTVILGLGC
RLAVTQAGLTLVSTTYIKSLPVEIIKLHPGLVRSLERRPENQLFVQSLTEACKGSQTRVF
AAGVRTKEEWRMLLGKGVYGGQGDFFAASVLVTDELKKYSSRHRV
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgggatttacgaccagattttcgatacttgtggtattgctgacggttctcgccattttt
cttatgcttttcagtagcatatttagcctctgttattacagccagctgcggactgagcag
cagctgcgtgaggttacggccagtatcgatcaggcgttattagtgcaatcgcctgaaaat
atccaatattggctgccgagcatgatgaaaacggcaggcattgttgtgctggatattcag
gataacgattcgaccctctattcaatacagctccctgaggccggctgggaacgcacgcac
ctctatcatgaggtcgaatttccactgatgcaccacctgaacatgacgatagccatacgg
tatgtcgatccgctgattggcttaccgcgctttgtggtgtcgatgctatcggtgctgttg
gctgcgggtctgatgcttttgatgctgtacttctccatccgctggctgcgccgtcaggcc
gcgggacaggaagaattggaagaacgcgcgcagcgtattctcaagggcgaacgtgaatcg
gttatgcaggggtcggtacgtgaatggccggtcaataccagcggggcgctcgatcaactg
ctgtctgatttagtggaggcgcgggaggagcgcgggcgggttgataccttaattcgcgcg
ttcgccgcacaggatgccgaaaccgggctgagtaatcgtctgttttttgataatcaactg
accacacagttggaggatggcgaagaagtggggacgcacggcgtcgtcatgatgatccgc
gtacccgattttgaaactttgcaggaaacgcacggtgatagcagtgcgcttcaggaatac
cgtttcacgctgatcaatctgctgtcgacgtttgtcatgcgctatccctccgcgttgctg
gcgcgctatttcagcagcgatttcaccgtattactccctcatagcacgctaaaagaagcc
aatgcgattgccacgcagctggtgaagtccatcgatattctccctgcctgcccgttgatc
gatcgggaagaagtgctccacattggtatctgcgcctatcgcggcgggcaaagcgccgag
caggtgatggaaagtgtggaagacgcgacgcgcaatgcggtgttgcagggcggtaacagc
tggtgcgtgtttgacagacaagtgccagagaaggggcgcggcagtgtgaaatggcgcacc
ttgctggaacagacgttggcgcgtggcggcccgaggctgtatcagaaacctgcggtcacc
aaagagggcgtggtgcatcatcgcgaaatgatgagccggatctacgatggggaacaggaa
ctgctcgccgcggagtatatgccgctggttcaacaactggggctggcagccagctatgat
cgacagcttgtggcgcgaattattgatttgtcagcgaactggcccggggaaacactggct
ttgccggtaagcgtggactcacttttgcagaagcctttcctgcgttggctgaaagaagtc
ttactacaatgtccgaaaacgcagcggcagcgcattttatttgaacttgcagaggcagat
gtttgtcaatatatcggccgcctgcgcccggttctcactgtgatcctgggattaggctgt
cgtctggcggtaacgcaggcgggtttaacgctggttagtacgacatatatcaagtcactc
cccgtggagatcatcaagcttcatcccggtttggtgcgtagtcttgaacgtcgtccggaa
aatcagctgtttgtacaaagcctgaccgaagcctgtaaaggctcgcaaacgcgagtgttt
gccgctggcgtgcggaccaaagaggagtggcgaatgctgttgggcaagggggtttatggt
gggcaaggggatttttttgccgcatcagtccttgtaacggatgagctgaaaaaatattca
tcgcggcatcgcgtttaa
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