Parasphingorhabdus cellanae: J4G78_00385
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Entry
J4G78_00385 CDS
T07111
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
parj
Parasphingorhabdus cellanae
Pathway
parj03030
DNA replication
parj03430
Mismatch repair
parj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
parj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J4G78_00385 (dnaE)
03430 Mismatch repair
J4G78_00385 (dnaE)
03440 Homologous recombination
J4G78_00385 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
parj03032
]
J4G78_00385 (dnaE)
03400 DNA repair and recombination proteins [BR:
parj03400
]
J4G78_00385 (dnaE)
Enzymes [BR:
parj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
J4G78_00385 (dnaE)
DNA replication proteins [BR:
parj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
J4G78_00385 (dnaE)
DNA repair and recombination proteins [BR:
parj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
J4G78_00385 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
T2SSK
DUF655
tRNA_anti-codon
COE1_HLH
Motif
Other DBs
NCBI-ProteinID:
QTD56105
UniProt:
A0ABX7T5K8
LinkDB
All DBs
Position
77867..81376
Genome browser
AA seq
1169 aa
AA seq
DB search
MSQIPFVHLRSFSAYTILDGAMEPKAIGAVAKERGFPAIALTDRIGLFASMAFDDGCRAN
GVQPITGCFLRVARPGPSGSDKPAMDWIALYAQNEDGYQNLCRLVSASHLERPAELDAHI
PLEMLEQHNAGLLALTGGGEGAVTRLLAEEQQSEAEAYLTQLQQYFPDRLYIELSRRDDP
VEMVAEAGLIALAMDRNIPLVATNPSCFAEPDFHEAHDAMKCIAGSAYVENDDRDKPSPH
LWIKSAMVMEDLFSDLPEALENTLVVAKRCAYSPPRRDPILPSLAGDLAGEAEQLRRDAT
AGLEERLAHVGDIEGAERQDYFDRLDFEINVIVNMGFPGYFLIVADFIKWAKDQDIPVGP
GRGSGAGSVVAWALTITDLDPIKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQE
KYGTGQVAQIITFGKLKARAVLRDVGRVLQMPYGQVDRLTKLVPNHPTDPWDLKRALNGI
SELAQDYKQADVKRLFDLAMKLEGLPRHSSTHAAGVVIGDRPLDQLVPLYRDPRSDLPVT
QFDMKFVEQAGLVKFDFLGLKTLSVLKKAVELLAERNIEVDLDTLAWDDAAVFELLQRGD
TVGVFQLESEGMRRTLAAVKPTNFGDIIALVSLYRPGPMDNIPLFGDRKNGRAELAYPHP
LLEDILKETYGIIVYQEQVMQAAQVIAGYSLGEADMLRRAMGKKIQSEMDAQRSIFVEGA
AKNGVEGPQANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPHEFYAASMCFDM
HQSDKLSIFVDDIKRLGVTILPPSINKSRPSFAVEEQEGSLLAVRYALAGLKNVGEKAMQ
SLVAERAESGPFQSMDDFANRVDPSGMNKRQIESLSAAGAFDEMEPNRAAVYEGADMLLS
VANSAAEARTSGQGGLFGEGGAGDMQAIRLPANSNWNLSEIMLRERDAYGFYFASHPVTQ
FQAVTSSHGAMTYAALCEEGPIAEGQRKPAVMAALVEGVRWRESKRGKRFVLVDLSDSSG
QFSGSCFEEEQCELLADMAKEGSCALLNVELDQRSDDESPRVAIRRAQAMDGLEKTTRTR
MELDVRNLDSLHELKNFLAPLAGGKSELIATVPSFDGEVAHICLGRSFQLDAQVAETLSH
IAGLENIRLGPATGSRPVRHRRPNLRLVS
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagattccctttgtccatctgcgctctttttcagcttacaccatcttggatggc
gcgatggagccgaaggcgataggcgctgttgccaaagagcgcgggtttccggcgatagca
ttaacggaccgcatcggcctgtttgcgtcgatggcgtttgacgacggttgcagagccaac
ggtgttcaaccgataaccggctgttttttaagggtcgccagacccggccccagcggaagc
gacaagccggcaatggactggattgcgctttatgcgcagaatgaagacggctatcaaaat
ctctgcagactggtgtccgcctctcatctggaacgcccggcggagctagatgcgcatatt
ccgcttgagatgcttgagcagcataatgccggccttttggcgctgaccggtggcggtgaa
ggggccgtaacccgtttgcttgcagaagagcagcagtcggaggcagaggcctatttgacg
cagcttcagcaatattttcctgatcggctgtatatcgagctgtcccgccgtgatgatccg
gttgaaatggtagcggaagcgggcctgatcgcactggcgatggatcggaatattcctctc
gttgcgaccaaccccagttgttttgccgagccggattttcatgaagcccatgatgccatg
aaatgcattgccgggtccgcttatgtggaaaatgatgaccgcgacaaaccatcgccgcat
ctgtggatcaagagcgccatggttatggaggatttattctccgacctgcctgaagcgctt
gaaaacacgctggtggtggcaaaacgctgtgcttactcaccaccacgccgagatcccatt
ttgccgagtctggccggcgatctggctggcgaggctgaacagttgcgccgcgatgcaacc
gctgggcttgaggaacgcctggcccatgttggtgatattgaaggggcagagcggcaggac
tattttgaccggcttgattttgaaatcaatgtgatcgttaatatgggtttcccgggctat
tttctgatcgttgcggactttatcaaatgggcaaaggatcaggatataccggtcggtccg
gggcgcggttctggcgcgggctcggtagtggcttgggcgctgacgattaccgatcttgat
ccgatcaaactgggtctgctgtttgaacgtttcttgaacccggaacgtgtgtcgatgcca
gacttcgacatcgatttctgcgaaacccgtcgcggcgaagtgatccgctatgtgcaggag
aaatatggcacagggcaggtcgcccagatcattacgttcggtaagctcaaagcgcgagcg
gttctgcgtgacgtcggccgtgttttgcagatgccttatggtcaagtggaccgcctgacc
aagctggtacccaaccacccgaccgatccatgggacctgaaaagggcgctgaacggtatt
tccgagctggcgcaggactataagcaggctgatgtgaaacgcctgtttgaccttgcgatg
aaactggaaggcctgccgcgccatagttcgacccatgctgccggtgtggtcatcggggac
aggccgctcgaccagctcgtcccgctttatcgcgatccacggtcggatttgccggtcacc
caatttgacatgaaatttgttgagcaagccggtctggtgaagttcgattttctgggtttg
aaaacgctttctgttctgaagaaggccgtggagttgctcgctgaacgcaatatcgaagtc
gatctcgacacgcttgcttgggatgatgcagcagtgtttgaattgctgcaaagaggcgat
accgttggtgttttccagctcgaatccgaaggtatgcggcggacgctggccgcagtgaaa
cccacgaattttggcgatattatcgccctcgtttcgctctaccgccctggcccgatggac
aatatcccgctcttcggagatcgcaagaacgggcgcgcggaactcgcttatccgcatccg
ctgctcgaagacatcctgaaagaaacctacggcatcatcgtttatcaggaacaggtgatg
caggccgcgcaggtgattgcgggttactcgcttggtgaagccgatatgttgcgtcgcgcg
atgggcaagaagatccagtcggaaatggatgcgcagcgcagtatcttcgtcgagggcgct
gccaagaacggcgtggagggaccgcaagcgaacgaattgtttgacctgatcgacaagttc
gccggctatggcttcaacaaaagccacgcggccgcttacgccttgctggcttatcagacg
gcctggctcaaagcccattatccgcatgaattttatgccgcctcgatgtgctttgacatg
catcagagcgacaagctcagcatttttgtcgatgacatcaagcggcttggcgtgacgata
ttgccgccttcgatcaacaaaagccgaccgtcgttcgcggttgaagagcaggagggatcg
ctgcttgccgtgcgttatgctttggcggggctgaaaaatgtcggggaaaaggcgatgcag
tcgctggtcgccgagcgggctgaaagcgggccgttccaatcgatggatgactttgccaac
cgggttgatccgtccggaatgaacaaaaggcagattgaaagtctttctgctgccggcgcg
tttgacgaaatggaacccaatcgtgcggccgtttatgaaggggcggacatgttgctgtct
gtcgccaatagcgcggcagaggcaaggaccagcgggcagggcggtctttttggcgaaggc
ggcgctggcgatatgcaagccattcgcctgccggcaaatagcaattggaacctcagcgag
atcatgttgcgtgagcgcgatgcttatggtttctacttcgcatcccatccggtcacacaa
tttcaggctgtgacgtcctctcatggggcgatgacctatgcagccttgtgtgaagagggt
ccgatcgccgagggacaacgcaagccagcggtcatggcggcgctggtcgaaggtgtgcgc
tggcgagagagcaaacgtggcaagcggttcgtactggtcgacctgtcggacagcagcggg
cagttttccggcagctgctttgaggaagagcaatgcgaattgctggcggatatggccaag
gaaggcagctgtgccttgctgaacgtggaactcgatcagcgttccgacgacgaaagcccg
cgtgtcgcgatccggcgggcacaggcgatggatggtctggaaaagaccacccgtacaagg
atggagctggatgtgcgcaatctggacagcctgcacgagctgaagaatttcctggcacct
ctcgctggcggcaagagcgaactcattgccacggtgcctagttttgacggcgaagttgct
catatttgcctcggtcgttcctttcagcttgatgcgcaggttgcagagacgctcagtcat
attgcggggcttgaaaatatccgtctgggccctgctaccggctctcgaccagtccgacat
cggaggcccaatttaagacttgtaagctga
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