Parasphingorhabdus cellanae: J4G78_00440
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Entry
J4G78_00440 CDS
T07111
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
parj
Parasphingorhabdus cellanae
Brite
KEGG Orthology (KO) [BR:
parj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
parj03400
]
J4G78_00440 (addB)
Enzymes [BR:
parj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J4G78_00440 (addB)
DNA repair and recombination proteins [BR:
parj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
J4G78_00440 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Arcadin_1
Motif
Other DBs
NCBI-ProteinID:
QTD56115
LinkDB
All DBs
Position
92449..95448
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AA seq
999 aa
AA seq
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MTKRSAPAIYNIAAHGGFADALAQGLIDRFAKDPLGLARGLVILPNNRARRAVHDAFVRL
SEDGLLLPQMAVIGDLELDESIGVALDSGQLALDIPPSVDPLDRLLMLARLIEMESAAKG
NALLSKEALRLAREFARTLDQLTVEEIALKDLFDIDVEPELSGHWQDSLAFFRVIAEKWQ
AKLNDMGAVDEAARRNALFDQSVKVWKTSPPNHFVVAAGITTSAPAIARFLRAIAFLPDG
MVVLPDLDMVMTDEEWDMLGPFEPDSETGKTDRAQETHPQYHMKLLLERMSIARGEIVRW
PRTGTSGAAAKRSRALSNAFAIPKLTSRWQSLDANERSLAGVQTIEARNSAEEAQIVAIL
AREALETPERRVAIITPDRALAGRISAHLERWMIAADDTAGQPLSKKPEGTFFLALLSAA
TDGFPPAEFLTLLKHPLVRAGEGRLEWLSQVRKLDLLMRGPRPAPGLSGIDSLFQSEDQR
TGGLREELQPWWQDVRAVFEPAAKILSGAADWAATLSEIRQLADLLTNGQVWAGPAGRQL
ADFLSDMEDRAALGPMKIQSSEIASYFETFLADIPVRPPYGGHPRIALYGLLEARLQQAD
LVLCCGLNEGSWPQAITPDPWLAPMVRKSLGLPAQERQIGLSAHDLVGAMGAQNVVLTRA
GRDGSGPAIASRFLLRLRAMCGDNLKAHPIAKNWARRLDQPEKPAKIDQPAPEPSAEQRL
VKLSVTQVDRLIADPYAFYASRIMGLGALDMIDAEPSPAWRGSIIHDILDKWAKEDDYDP
DALKRRAEAFLNERSSHPLMRTLWAPRLMQGLLWVADTVAQQRADGRIPVRSEQKGSACI
AGVDLFGIADRIDRMPDGNLGIVDYKTGGPPSNKAVKEGFALQLGLLGAIAEKGDFGGLS
GDASSFEYWSLAKSGTKDSFGYIATPTNPRSPDKIAADEMVDHAVTEFTKAVTSYIKGDA
PMTAKLHPEYAPYADYDQLMRLEEWYGRAAVTEAEDGHE
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagcggtcagcgcccgcaatttacaatattgccgcgcatggcggctttgcggac
gcgctggcgcaaggattaattgataggtttgcgaaagacccgctcgggttggcgcgaggg
cttgtcatcctgcccaataaccgggcgcgtcgtgctgttcatgatgcttttgtcaggctg
agcgaagacggtttgcttttgccgcaaatggcagtgatcggggatctggagctagacgaa
tctatcggcgttgcgttggatagtggtcagctggcgctcgatatcccgccatcggttgat
ccgctggaccgtctgttgatgctcgcgcgcctcatcgaaatggagagcgcggccaagggt
aatgcgctattgtccaaagaagcactgcgattggcgcgcgaatttgcgcggacgctcgac
caactgaccgttgaggaaatcgcgctcaaagatctttttgatattgatgtagagccagaa
ttatccggccattggcaggactcgctcgcgttctttcgtgtgattgcagagaaatggcag
gccaagctgaacgatatgggcgctgtcgatgaagcggcgcggcggaacgctttgtttgat
caaagcgtcaaggtctggaaaacaagtccgcccaatcattttgttgttgccgctggtatc
acgacgtccgcccccgctattgcgcgctttttgcgggcgattgcgtttctgccagatggc
atggtggttctaccggacctggacatggtgatgacagacgaggagtgggacatgctcggc
ccgttcgagcccgattccgagacgggcaaaacggatcgggcgcaggaaacgcatccgcaa
tatcatatgaagttgctgctggaacgcatgtcgatcgcacgcggggagatagtgcgttgg
ccgagaacgggaacaagcggggcagcggctaaacggagtagggcgctgagtaacgctttt
gccatccccaaattaacatcgcgttggcaatcgctggacgcgaacgagcgcagcctggcg
ggcgtgcagaccatagaagcgcgcaatagcgctgaagaggcccagattgtcgccattttg
gcgcgcgaggctttggagacgccagaacgccgggtagcgattatcacgccagatcgggct
ctggcgggccggatatccgcccatctcgaacgctggatgattgcggcggatgatacggca
ggccagcccttatcgaaaaaaccagaagggacattctttctcgctttgctgtccgcggca
acggacgggtttccaccagccgaatttttgacgttgctaaaacatccactggtgcgggca
ggtgaggggcggttggaatggctttcccaagttcgtaagcttgaccttctaatgcgcggc
ccccggccagccccgggattgtcgggcattgacagcctgttccagagtgaggatcaaaga
accggaggcctgagggaagaacttcaaccttggtggcaagatgtaagagcggttttcgag
ccagcggcaaagatattgagcggagcggcagattgggccgcaaccttatccgaaatccgg
caactcgccgacttgctgaccaatgggcaggtctgggcaggaccagcggggcgccaattg
gctgacttcctatcggatatggaagatcgtgcagcactggggccgatgaaaatccagtca
tcggaaattgccagctattttgagacttttttggcggatataccggttcgccccccttat
ggcggacatccccggattgcgctctatggtctgctggaagcacggctccaacaggcggat
ctggtcctgtgttgcggtttgaatgaaggcagctggccgcaagccatcacgcccgaccca
tggcttgcccctatggtccggaaatcgctgggcttaccggcgcaagagcgccaaattggt
ttgtccgcgcatgatctggtcggtgcgatgggcgcgcaaaatgtggttttgacgcgggcg
gggcgagatggctcgggaccggccatcgcctcgcgtttcctgctgcgtttgagagcgatg
tgcggtgataacctgaaagcacatcccatcgccaagaattgggcgcggcgtttggatcaa
ccggagaaaccggcgaagatcgatcagcccgcaccggaacccagcgcagagcagcgtctg
gtgaagctgtctgtcacccaagtcgaccgactgattgccgatccatatgccttttatgca
tcgagaataatgggcttgggcgcacttgatatgatcgatgctgaaccaagtccggcatgg
cgcgggtctatcattcacgacattttggataaatgggcaaaagaggatgactatgaccct
gatgctctgaaacggcgcgcagaggcctttttgaacgaacgatcatctcatcctttgatg
cgtacattatgggcaccgcgtttgatgcagggtttattatgggtggctgatactgtggcg
cagcagcgcgcagacggtcggatacctgtcagatcagagcaaaagggcagcgcgtgcata
gcgggcgttgatctgttcggtatcgcggaccggattgaccggatgcccgatggcaacctt
ggtatagtcgattataaaacgggtgggccgccgtcgaacaaggctgtgaaagaagggttt
gctctccaactcggcttattgggcgccattgccgaaaaaggcgattttggtgggctttcc
ggcgatgccagcagctttgaatattggtcgttagcgaaatcggggaccaaagacagtttt
ggttatatcgcaacgccaaccaatccccgcagtccggacaagatcgcagccgacgagatg
gttgatcatgcggtgaccgaattcaccaaagctgtgaccagctatatcaaaggcgatgcg
ccgatgaccgccaaactccatcccgaatatgcgccctatgctgattatgatcagttaatg
cggcttgaggaatggtatggccgcgcagcggtaactgaggcggaggacgggcatgagtga
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