Parasphingorhabdus cellanae: J4G78_01390
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Entry
J4G78_01390 CDS
T07111
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
parj
Parasphingorhabdus cellanae
Brite
KEGG Orthology (KO) [BR:
parj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
parj03032
]
J4G78_01390 (topA)
03400 DNA repair and recombination proteins [BR:
parj03400
]
J4G78_01390 (topA)
Enzymes [BR:
parj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
J4G78_01390 (topA)
DNA replication proteins [BR:
parj03032
]
Prokaryotic type
DNA Topoisomerases
J4G78_01390 (topA)
DNA repair and recombination proteins [BR:
parj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
J4G78_01390 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QTD56288
LinkDB
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Position
complement(290444..293017)
Genome browser
AA seq
857 aa
AA seq
DB search
MQLVIVESPAKAKTIENYLGSDFKVLASYGHIRDLPPKDGSVDPDDGFAMLWQPYADKTK
QLKAITDLSKKATRLVLATDPDREGEAISWHVLEVLKKKKALPEKVDRVTFNAITKSAVT
EAMAHPRALDDDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLIVERE
REIEVFNPQEYWSVTSQMEQGGQAFEARLTIHQGKKLGKMDLSNEAKAMAAKTAVENGLF
TIETVETKPLTRNPPPPFTTSTLQQEAARKLGYSASHTMRIAQQLYEDGGITYMRTDGVQ
MDGSAISAARKAISDRYDASYVPDSPRIYKSKAKNAQEAHEAIRPTSFTRDTMGSGDHAK
LYSLILKRAMASQMAAARLERTTVEMLDGTGQTGLRATGQVVKFPGFMALYEEGRDDSKD
ENGGLLPAMSKGDSPAKKSVEANQHFTQPPPRYSEASLVKKMEELGIGRPSTYASIIKTL
KDRAYVRTEGNRFFAEESGRLLTGFLERFFERYVAYEYTAGLEDELDDVSGGRAEWQKIL
EAFWHDFKPKTAEVMEKLPSEVTAELDKFLEPYLFPEKEDGSDPRLCPRCNEGKLALRGG
RFGAFVACSNYPECKFTRRFAQGGGANADADEGPEDLGVDPDTDEKITKMVGRFGPYVQR
GEGKEAKRSSIPKDVPAEEFGLEWALKLLSLPREVGMHPETGKEVNAQIGRYGPYLSHDG
KSARLENTMEVFEIGMNAAVAKLADAAKNGKGGRRGAEPLKIMGKHPRTEEEIKLMDGRY
GPYVTDGTTNASLPKTVDKDQLTLEEAAQLIDDRAAKGPAKKRKKKAAPKKKAAAKKKPA
AKKKPAAKKAPAKAKAE
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgcaattagtaatcgttgagtcacccgccaaagcgaaaacaatcgaaaattatctcgga
tcggatttcaaggtgctggcctcttacggtcatatccgggatctgccgcccaaagatggc
tcggttgatccggacgatggctttgccatgctgtggcagccctatgcagacaagaccaag
cagctcaaggcgattaccgacctatccaaaaaagccacgcgcctcgttctcgcaaccgac
cctgaccgggaaggggaggcgattagctggcacgtgctagaggttttgaaaaagaaaaag
gcgctgcctgaaaaagtggatcgcgtaacgtttaacgcgattacaaaatccgccgttacc
gaagccatggcgcatccgcgcgctttggacgacgatttgattgacgcctatcgcgcgcga
cgtgcgttggattatctggtgggcttcacgctttcacctgtgctgtggcgcaagctgccc
ggtgccaaatccgctggccgcgtccagtccgtggccctgcgcttgattgtcgagcgcgag
cgtgaaattgaagttttcaatccgcaggaatattggtccgtcacatcgcagatggagcag
ggcggtcaggcttttgaagcacggctcaccattcatcagggcaagaagcttggcaagatg
gatctgtccaacgaagccaaggccatggccgccaaaacggcggttgaaaacggcctgttc
acgattgaaacggtcgaaacaaagccgcttacccgcaacccgccaccgccattcacgacc
tcgaccctgcaacaggaagcggcccgtaaactcggctattcggcaagccacacgatgcgc
atcgcgcagcagctttatgaagatggcggcatcacctatatgcgtaccgatggcgtgcag
atggatggcagtgccatttctgccgcgcgcaaagcgatatccgatcgctatgatgccagc
tatgtgcctgacagtccgcgcatctataaatccaaagccaaaaatgcgcaggaggcccat
gaggcgatccggcctaccagctttacccgcgacacgatgggcagcggcgatcatgccaag
ctgtacagcctgatcctgaaacgcgccatggccagccagatggccgccgcgcgactggaa
cgcacaactgtcgaaatgctcgacggcacggggcaaaccggtctgcgtgctaccggacag
gtcgtcaaattccccggctttatggcactttacgaagaaggccgcgacgacagcaaggac
gaaaatggcggcttgctgccggccatgtccaagggggatagtccggcgaagaaatcggtc
gaagccaatcagcatttcacccagcctccgccccgttacagcgaagcaagcctggtcaag
aagatggaagaactgggcattggccgtccttccacctatgcctcgatcatcaagacgctg
aaagatcgcgcctatgttcgaaccgagggaaatcgtttctttgcagaggaaagtgggcgg
cttttaacaggttttctcgaaaggtttttcgagcgctatgtcgcttatgaatataccgca
ggccttgaggacgagctggacgatgtcagtggcggccgtgcggaatggcaaaaaattctt
gaagctttctggcatgatttcaagcccaagacggccgaagtcatggagaaattgccgtcc
gaagttacggcagagctggacaaattcctcgaaccctatctgttcccggaaaaggaagac
ggcagtgatccgcgcctgtgcccgcgttgcaatgaaggcaagctggcccttcgtggtggc
cgtttcggcgcctttgtcgcttgttccaattatcccgaatgcaagttcacccggcgcttt
gcccaaggtggcggcgccaatgccgacgcggatgaaggaccggaagacctgggtgttgac
ccggataccgacgagaaaatcaccaaaatggtcggtcgctttggtccctatgttcagcgc
ggcgagggcaaggaagcgaaacggtcgtctatcccgaaagatgtaccggcagaagagttt
ggccttgaatgggcattaaaattgctctctttgccacgcgaagtcggcatgcatccggaa
acgggcaaggaagtaaatgcgcaaatcggccgttatgggccctatctgagccatgacggc
aaatcggcgcgcctggaaaacaccatggaagtgttcgaaatcggcatgaacgccgctgtt
gccaagctcgccgatgccgcgaaaaacggcaagggcgggcgcagaggcgccgagccgctc
aagatcatgggcaaacatccgcgcaccgaagaagaaatcaagctgatggatggccgctac
ggcccctacgtcaccgatggcacgaccaatgcgtcactgcccaagacagtggataaggac
cagttgacgctggaagaagcagcgcaactcattgatgaccgcgcggcaaaaggcccggcc
aagaagcgcaagaagaaagcggcgccaaagaagaaggctgctgccaagaaaaagcctgcg
gcgaaaaagaaaccggcggcgaaaaaagcccctgcgaaggctaaggcggagtag
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