Parasphingorhabdus cellanae: J4G78_05840
Help
Entry
J4G78_05840 CDS
T07111
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
parj
Parasphingorhabdus cellanae
Pathway
parj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
parj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4G78_05840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parj03019
]
J4G78_05840
03009 Ribosome biogenesis [BR:
parj03009
]
J4G78_05840
Enzymes [BR:
parj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J4G78_05840
Messenger RNA biogenesis [BR:
parj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J4G78_05840
Ribosome biogenesis [BR:
parj03009
]
Prokaryotic type
rRNA helicases
J4G78_05840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QTD57077
LinkDB
All DBs
Position
complement(1175543..1177600)
Genome browser
AA seq
685 aa
AA seq
DB search
MPFSAVSPLLAEALANREYAKPTAVQAAVLEPETAGRDLIVSAQTGSGKTVAFGLAMAPQ
LLDDNGRFPFLVEPLALVIAPTRELALQVSRELKWLYEPAGVQIATCVGGMDASKERRTL
RRGAHVIVGTPGRLRDHLERGALDLSKLRAAVLDEADEMLDMGFREDLEEILDATAEDRR
TLLFSATIPKPIINLAKRYQNDAMRISTVGEDRGHGDIAYQAITVAPADTENAVVNLLRF
HEAESAMLFCGTREAVRRLHTSLVDRGFSAVALSGEHTQAERNQAMQALRSKRARVCVAT
DVAARGLDLPTLSLVIHVEIPRDAETLQHRSGRTGRAGKKGTAVIIVPYQRRKRVESMLR
GAKINAEWKDAPTRADIRKNDAERLIETLLQPVEIDEDDLELAKRLMAEKTPEEIAAMLV
QSHRAKMPAPEQMLDRGAQSKPAPGGPRPGFEDTVWFKMDVGHNQRADARWILPVLCRRG
HITKNEIGAIRINGDDTLFEIPRRVVDKFTKAIAEKRETGGDDTDDITITQFEGTPRDAA
KRNRKGGRRDNAGGGGRDYSNASKKFGGKKFGSKKFGDRKGASKSEGSKSGGGKSDGRDF
GGKKKYGNKSDEGGKPYVKRKAAGDREGGNEGGAKREFGDGFKKKSDFKGDRKSGPKGNF
GGKKKKPHRGKRPFEGQKDRGPRAD
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgcctttctcagcagtatccccgcttcttgccgaagcgttagcaaatcgcgaatatgct
aagccgacagcggtgcaagccgcagtgctggaaccagaaaccgcaggccgcgacctcatt
gtgtctgcccagacgggttccggcaagacggttgcctttggcttagccatggcgccgcag
ctattggacgataatggccggtttccgtttctggttgaaccgcttgccttggttattgca
cccacgcgtgaattggctctgcaggtcagccgtgaactcaaatggctgtacgagccggcg
ggcgtgcaaatagccacctgtgtcggcggtatggatgcgtcgaaagaacgccggaccctg
cgccgcggggcgcatgttattgtcggaacgccaggccgtttgcgggaccatcttgaacgc
ggcgcgctcgaccttagcaagttgcgcgcggccgtgctcgatgaagcagacgagatgctc
gatatgggattccgtgaggatctggaagaaatattggatgcgacggcggaagaccgccgg
acattgctattttccgcgacgataccaaaaccgatcatcaatcttgccaagcgttatcaa
aatgacgcgatgcgcatttctacggtcggggaagatcgcggccatggcgatattgcctat
caagcgataactgttgcgcctgctgataccgaaaatgcggtggtgaacctgttgcgcttt
catgaagcggaatcagcgatgctcttctgtggaacacgggaagctgtgcgccgtttgcat
acgagcttggttgatcgtggtttcagtgccgttgcgctttcgggcgaacacacacaagct
gaacgcaatcaggcgatgcaagcgctgcgcagcaaacgcgcaagggtctgtgtggcaacc
gatgttgccgcacgcggccttgatctgccaacattgtcgttggttatccatgttgaaatt
cctcgcgatgccgagacgctgcagcaccggtctggacggactggccgtgccggcaaaaag
ggtacggcggttatcatcgttccctatcagcggcgcaagcgggtggaatccatgttacgc
ggcgcgaaaattaacgccgaatggaaagatgcgccgacgcgggcagatattcggaaaaat
gatgctgagcgtctgatcgaaaccctgcttcaaccggttgaaattgatgaggatgatctg
gaactcgcgaaacggttgatggcggaaaaaacgccggaagaaattgctgcgatgctcgtt
cagtcgcatcgcgcaaaaatgcccgcgccggaacagatgctggatcgcggcgcacagtca
aaacctgcacccggcggaccgcgccctggttttgaagatactgtctggttcaagatggat
gttggccataatcagcgggccgatgcacgctggattctgccagtgctttgccgccgtggt
catattaccaagaatgaaattggcgcaatccggattaatggcgatgacacattgttcgaa
attccgcgccgagtggtggataaattcaccaaagcgattgccgagaaacgcgaaactggt
ggcgatgacacggacgatattacgatcacgcagtttgaaggcacaccgcgtgatgcagcc
aaacgcaaccgcaagggtgggcgccgagataatgctggcggtggtggccgagattacagc
aatgccagcaagaaatttggcggtaagaaatttgggtccaagaaattcggcgatcgcaaa
ggtgccagtaaatcagagggcagcaaatccggcggaggaaaatcggacggccgcgatttt
ggcggcaagaagaaatatggcaataagtcggatgaaggcggcaagccctatgtgaaacgc
aaagctgcgggagatcgtgaaggcggtaatgaaggtggcgccaaacgcgaatttggtgat
ggcttcaagaaaaagtctgactttaagggcgaccggaaatctggccccaaaggcaatttc
ggtggcaagaagaaaaagccgcatcgcggtaaacggcccttcgaaggtcaaaaagatcgc
gggcctagggctgactga
DBGET
integrated database retrieval system
