Parasphingorhabdus cellanae: J4G78_17100
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Entry
J4G78_17100 CDS
T07111
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
parj
Parasphingorhabdus cellanae
Pathway
parj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
parj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4G78_17100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parj03019
]
J4G78_17100
Enzymes [BR:
parj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J4G78_17100
Messenger RNA biogenesis [BR:
parj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J4G78_17100
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
UvrD-helicase
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QTD55876
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All DBs
Position
3558025..3559407
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AA seq
460 aa
AA seq
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MTLFSDFALAKPIQTRVAEGGYTKPSPIQQQAIPPALEGKDILGIAQTGTGKTAAFSLPS
IHHLLNNKRKPGRNECRMLVLAPTRELARQIADSMTGYSKGLGMYVTSAFGGVPINRQKR
ILQRGVDVLVATPGRLLDLVDQRCLDLSKVEILVLDEADQMLDLGFIVPLKKIVPLLPKK
RQSLFFSATMPKTISQLADQFLTNPVQVSVAPQSTTAERVDQRVTYINQDDKQRLLKDFV
NQENPDHMLVFTQTKHGADKVVKNLNAVGIHSAAIHGNKSQPQRERALGDFRKGKINILV
ATDIAARGIDVDGVSHVINFDMPNVPEQYVHRIGRTARAGASGISYSMVAPDERQFLRDV
VKLTGVKPEVVELPEGYDEPPREEVAPRIYGQKPKKYGAKPTRGGPSKNKHSSRKGRPGG
GGRGGNGRGGPGSKPKSDGPKHWNNGAKSFKRRQARKADA
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
ttgactttattttctgatttcgctctggcgaaaccaattcaaacgcgtgtggccgaaggc
ggctacaccaaaccatcccccattcagcagcaggccattccgccagcgctggaaggcaag
gatattcttggcatcgcacagaccggcaccggcaagaccgctgctttctcgctgccttct
atccatcacctgttgaacaacaagcgcaagcctggccgcaatgaatgccggatgctggta
ctcgcaccgacgcgcgaattggcgcggcagattgccgatagcatgaccggctattccaaa
ggccttggcatgtatgtaacgtctgcttttggcggtgttccgatcaaccggcaaaaacgc
attttgcagcgcggcgtggatgtgcttgtcgcaacccccggccgtttgctggacctcgtc
gatcaacgctgcctagacctcagcaaggttgagatattggtgctcgacgaggcggatcaa
atgcttgacctcggtttcatcgttccgctgaaaaagatcgttccgttgcttccgaaaaag
cgtcagagcctgttcttctcggcaaccatgcctaagaccatttctcaactggcagaccag
ttcctgaccaatccggtccaggtttctgttgcaccgcaatcgacaaccgctgagcgggtt
gaccagcgcgttacctatattaatcaagatgataagcagcgtttgttaaaagactttgtg
aaccaggaaaacccggatcacatgctggtctttacccaaaccaaacatggcgcggacaag
gttgtgaaaaacctgaatgccgtcggtatccacagcgctgccattcacggtaacaagagc
cagccacagcgcgaacgtgctttgggtgatttccgcaagggcaagatcaatattctcgtc
gcgacggacattgccgcgcgcggtatcgatgttgacggggtcagccacgtgatcaacttt
gatatgcccaacgtgccggagcaatatgttcaccgcatcgggcgtactgcacgggcaggg
gcctccggtatttcctactcgatggtggcaccggatgaacgccagttcctgcgcgatgtg
gtaaagctaaccggcgtgaaaccggaagtggttgagctacccgaaggctatgacgaacca
cctcgcgaagaagtagcgccccgtatctatggccaaaagccaaagaaatatggcgcgaag
ccgacccgtggcggtccttccaagaataagcatagttctcgcaaaggtcgcccaggcggc
ggtggtcgcggtggcaatggccggggtgggccgggttcaaaaccaaagagcgacggcccg
aagcattggaacaatggcgcaaaatcattcaagcggcgccaggcgcgcaaagcggatgct
tga
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