Paralcaligenes sp. KSB-10: LSG25_01115
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Entry
LSG25_01115 CDS
T07761
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
park
Paralcaligenes sp. KSB-10
Pathway
park03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
park00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LSG25_01115 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
park03400
]
LSG25_01115 (uvrB)
DNA repair and recombination proteins [BR:
park03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LSG25_01115 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LSG25_01115 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
DEAD
UVR
AAA_30
Kinesin
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
UHL66179
LinkDB
All DBs
Position
248040..250058
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AA seq
672 aa
AA seq
DB search
MNAPGFVEYPNSPFQLYQPYPPAGDQPAAIDSLVDGINDGLMFQTLLGVTGSGKTFTMAN
TIARTGRPAIVLAPNKTLAAQLYSEMREFFPNNAVEYFVSYYDYYQPEAYVAARDLFIEK
DSSINEHIEQMRLSATKSLLERRDTIIVGTVSCIYGIGNPGDYHAMVLTLRAGDTIPRRE
LLARLVAMQYERNDVEFVRGNFRARGETIDVFPAEHAELALRITLFDEEIESLEMFDPLT
GKIKQKVPRFTVFPSSHYVTPRETVLRAIETIKLELRERLDFLVKDGKLVEAQRLEQRTR
FDLEMLQELGFCKGIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTVGQLGGMY
RGDRSRKETLVQFGFRLPSALDNRPLQLEEFEQRMRQCIFVSATPAVYEKEHADNVVEQV
VRPTGLVDPVVEVRPALTQVDDLLGEIKLRVEVRERVLVTTLTKRMSEDLTDYLNESGLK
VRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSE
RSLIQTIGRAARNLHGRAILYADRITDSMRRAMGETERRRIKQTAFNKEHGITARGVDKA
VREMIDGVMAAAQPVSAADDISPDVLVDEKSLAKEIRRLEKLMMDHAKNLEFEQAAAARD
SLNRLKQRALLS
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctcccggctttgtcgaatatccgaatagtccctttcagttgtaccagccctat
ccgccggcgggggatcagcctgcggccatcgactcgctggtcgacggtatcaacgacggc
ttgatgttccagaccctgctgggcgtcacgggttcggggaaaaccttcaccatggccaat
acgattgcccgcacgggccgtcctgccatcgtgctggctcccaataaaaccctggcggcg
cagttgtattccgaaatgcgcgagtttttcccgaataatgcggtcgaatattttgtgtcg
tattacgactactaccagccggaagcgtatgtcgccgctcgcgatctttttatcgaaaaa
gactcgtccatcaacgagcacatcgagcagatgcgcctgtcggccaccaaaagcctgctc
gagcggcgcgacacgattattgtcggtacggtgtcgtgcatatacgggataggcaatccg
ggcgattaccatgcaatggtgctgacactgcgggcgggcgatacgattccgcgccgggaa
ttgctggcgcggctggtggccatgcagtacgagcgcaacgacgtggagttcgtgcgcggc
aactttcgcgcccgtggcgaaaccatcgatgtgttcccggccgagcatgccgaactggcg
ctgcgcattactttgttcgacgaggaaatcgaaagcctggagatgttcgacccgctgacc
ggcaagatcaagcaaaaggtgccgcgcttcaccgtctttcccagttcgcactatgtgacg
ccgcgcgagacggtgctgcgcgctatcgagaccatcaagctggaattgcgcgaacgcctg
gatttcctggtcaaggacggcaagctggtcgaggcgcagcggctcgagcagcgtacccgc
ttcgatctggaaatgctgcaggaacttgggttttgcaagggcatcgaaaattactcgcgc
catctgtcgggtgcggctccgggcgaacctcctccgacgctgatcgattacctgcctgcc
gatgccttgatgtttatcgatgaaagccatgtcaccgtgggccagctgggcggcatgtat
cggggcgaccgttcgcgcaaggaaacgctggtgcaatttggttttcggcttccctccgcg
ctggataaccggcctttgcagcttgaagagttcgaacagcgcatgcgtcaatgcatcttt
gtttccgcgacgccggccgtatatgaaaaagaacacgccgataatgtggtggagcaggtg
gtgcggcccacgggtctggtggatcccgtggttgaggtccggcccgccctgacgcaggtc
gacgatctgctgggggaaatcaagctgcgtgtcgaggtacgggaacgtgtgctggtgact
acgctgaccaagcgcatgtccgaggatctgaccgattatctcaatgaaagcggcttgaag
gtacgctatttgcactcggacatcgatactgtcgaacgggttgagatcattcgtgatctg
cgcctgggtgtattcgacgtgctggttgggatcaatctattgcgcgaggggctggacata
cctgaagtgtccctggtggcgattctggatgcggataaagaaggatttttgcgctcggaa
cgcagcctgatacaaaccattgggcgagcggctcgcaacctgcatgggcgagccattttg
tacgccgatcgcattaccgattcgatgcggcgggcaatgggcgaaaccgaacgccggcgc
atcaaacagacggctttcaataaagagcatggtattaccgcccggggcgtggacaaggcg
gttcgcgaaatgattgacggcgtgatggctgccgctcagcccgtttcggcggccgatgat
atttcgccggatgtgctggtcgacgaaaaatcgctggccaaggaaattaggcgcctggag
aaattaatgatggatcatgccaaaaacctggagttcgagcaggcggccgccgcgcgcgac
tcgctcaaccggctcaagcaacgtgccttgctgagttga
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