Paralcaligenes sp. KSB-10: LSG25_01330
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Entry
LSG25_01330 CDS
T07761
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
park
Paralcaligenes sp. KSB-10
Pathway
park03410
Base excision repair
park03430
Mismatch repair
park03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
park00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LSG25_01330 (recJ)
03430 Mismatch repair
LSG25_01330 (recJ)
03440 Homologous recombination
LSG25_01330 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
park03400
]
LSG25_01330 (recJ)
DNA repair and recombination proteins [BR:
park03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LSG25_01330 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LSG25_01330 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LSG25_01330 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
bMG1
Motif
Other DBs
NCBI-ProteinID:
UHL66184
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Position
complement(293163..294887)
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AA seq
574 aa
AA seq
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MVTPRLSTRPAQDQAARTLEAAGIHPLLARLWASRGVRNATETLLAWSALVPPGQLTQGE
HAARLLADAISDQKRLLIIADYDCDGATACAVGIRALRSMGAKVDFLVPNRFETGYGLSP
AVVELAVRHPSGKPDILITVDNGIASVDGVAAARASGIDVIITDHHLPGDTLPDALAIVN
PNQPGCGFPSKNLAGVGVIFYLMLALRAELRTRGIYAANAGPRLDALADLVALGTVADVV
KLDANNRLLVTQGLQKMRSGRMHAGVRALFAVAAREPNQASAFDLGFAIGPRINAAGRLA
DMSLGINCLICDDESEALRLARELDAINHERRAIETTMREEALATMELPETEIRAGVCVY
DPQWHQGVVGLVASKLKEAYWRPTFAFARSATGELRGSGRSIPDVHLRDVLDLVSKRHPG
IIIKFGGHAMAAGLTLREDAYPVFIDGFDEAVRELCGRASFDPLIETDGSLETGYANAEV
AGLLQQQVWGAGFPAPIFRDTFYVRQQRLLKDKHLKLALERGHQHFDAIWFGHADMLPEH
IDVAYRLDQNVWNGKVSVQLIVEYACGVGADSSS
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
gtggtcacccctagattaagcacccggccggctcaggaccaggcagcccgaacactcgaa
gcggcgggcatacatcctttgctcgcgcggctctgggcctccagaggggtcaggaacgcc
accgaaaccttgctggcctggtctgccttggtgccgcccgggcaactgacccagggcgag
catgccgccaggctgctggccgatgccatcagcgaccaaaagcgattgctcattattgcc
gactatgattgcgatggagcaacggcatgcgcggtgggcatccgggccttgcgcagcatg
ggcgccaaagttgacttcctggtccccaaccggttcgaaaccggctacgggctttcaccc
gcggtcgtcgaactggcggtgcgccatcccagcggcaagcccgatatcctgattactgtc
gacaacggcatcgccagcgtggatggcgttgccgccgcccgggcatcaggcatcgacgtc
atcatcaccgaccatcatttgccgggcgacaccctgcccgacgcgctggccatcgtcaat
cccaaccagccgggctgcggcttcccgtccaagaacctggctggcgtgggcgtcattttc
tatctgatgctggccctgcgcgccgaattgcgaacccgcggcatctatgccgccaacgcc
ggacccaggctcgatgcgctggccgatctggtcgcgctgggcaccgtagccgacgtcgtc
aagctcgacgccaataatcgcctgctggtcacgcagggcctgcaaaaaatgcgctccggc
cgcatgcacgccggcgtgcgcgccctgttcgccgtggcggctcgcgaaccgaaccaggcc
agcgccttcgacctgggattcgccatcggtccgcgcatcaatgcggccggacgtctggcc
gatatgagtctgggtatcaactgcctgatttgcgacgacgaaagcgaagcgctgaggctc
gcccgcgagctcgacgccatcaatcacgagcggcgcgccattgagaccaccatgcgcgaa
gaagccctggccaccatggagcttcctgaaacggaaatccgcgccggcgtatgcgtttac
gaccctcaatggcaccagggtgtggtcggactcgtggcatcgaagctcaaagaagcctat
tggcgccctactttcgcttttgcccgttccgccaccggcgaactgcgcggctcgggccgt
tcgattcccgatgtgcatctgcgcgatgtcctcgacctggtatccaaacgccatcccggc
atcatcatcaaattcggcggtcacgccatggccgccgggctgaccttgcgcgaagacgct
tacccggtttttatcgacggcttcgatgaagccgtcagagagctttgcggccgcgcttcc
ttcgacccgttgatcgaaaccgacggctcgctggaaaccggttatgccaatgccgaagtc
gccgggctgctgcagcaacaggtttggggagccggcttcccggcccccatctttcgcgac
actttttacgtgcgccagcagcgcctgctgaaagacaagcatctgaagctggcgctggaa
cgcggccatcaacacttcgatgcgatctggttcggccacgccgacatgctgcccgagcac
atcgatgtcgcgtaccgcctggatcagaacgtctggaatggcaaggtgtcggtgcaactg
atcgtggaatatgcctgcggggtgggcgctgactcgagctcctga
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