Paralcaligenes sp. KSB-10: LSG25_06575
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Entry
LSG25_06575 CDS
T07761
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
park
Paralcaligenes sp. KSB-10
Pathway
park03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
park00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSG25_06575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
park03019
]
LSG25_06575
03009 Ribosome biogenesis [BR:
park03009
]
LSG25_06575
Enzymes [BR:
park01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LSG25_06575
Messenger RNA biogenesis [BR:
park03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LSG25_06575
Ribosome biogenesis [BR:
park03009
]
Prokaryotic type
rRNA processing factors
LSG25_06575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
UHL65543
LinkDB
All DBs
Position
1442062..1444971
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AA seq
969 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIEAAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEIARTYFKEGVDVRTVRIQDALSEGQELIIQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMERLDIPSGMSIIARTAGIGRNVEELQ
WDLSYLMQLWSAIDTAARDNAAPILIYLESSLVIRAIRDYYSPEIGEILIDTDDIAEQAT
AFMSVVMPDNVQRVKVYRDDVPLFSRFQIEHQIETAYSRTVELPSGGSVVIDHTEALVAV
DVNSARSTRGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMEEGKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAALHAQVPVDVATFLLNEKRGDITKIESRLKVNLVLIPNKNLETPH
HHIERLRHDDPRLEEIKTSFELAQSPSTEVTWAPKEQETKARPEALVKGITPAQPAPVTS
TPERATAEKASGTGLFKRFMSWITSSSTPATPESKTETSDTRSSASRNKTARGTDRRERS
HEGGDRNRQRRGNRRPDNLENSVDETRRQPVRNARRSETDIDDNKPRSEQRPAEQADTGD
TSTGNRNGRNRRGRGRRREENPAETQVLDTTAAASMAAEDRPVAETLPRTEDIPQQDAEI
VSAAMAPDAENEQLDPERKRRRRRSRRGRRGSEAGGAESTGSESPETPAQAHTHFVAHET
PSFNPTALPVAAATLGAFPAVLAEEPAGFAPAVSAVSAVSAEPVEAPVRTISPESIEKAI
HAEHVHTAEVAPQPAEAPAEHVAAAASHEEAAPEVAPPAASPVEPPVQTATVAASPAPVE
AIVLGTTAEAGNSTLLRDTVVAAGMEWIETKAGYQAPAPAAPVRLGRARKPRDQASREEA
LEQVETHAG
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaatgttgtttaatgcaacgcaccaagaagaactacgcgttgcgattgtcgat
ggtcaaaaactcatagacctcgacatcgaagccgctggccgcgaacagcgcaagggcaat
atatacaagggggtcattacccgcatcgaaccgggcctcgaagcctgcttcgtcaactac
ggcgaagaccgccacggttttctgcccttcaaggaaattgcccgcacctacttcaaggaa
ggtgtcgacgtacgtaccgtacgcatacaagacgccctgagcgaaggccaggaactgatc
atccaggtggaaaaggaagagcgcggcaacaagggcgcggcgcttaccacttttatttcg
ctggccggccgctacctggtattgatgcccaacaatccgcgcggcggcggcgtctcgcgc
cgcgtcgagggcgaagaccgccaggaattgcgcgaaaccatggagcggctcgatatcccc
agcggcatgagcatcattgcccgtaccgccggcataggccgcaatgtcgaagaactgcaa
tgggacttgtcctacctgatgcagctctggagcgcgatcgataccgctgcccgcgacaat
gccgcccccatcctgatttacctcgaatccagcctggtcattcgggccatacgcgactac
tactcgcctgaaattggcgaaattctcatcgataccgacgacatcgccgagcaggccacc
gccttcatgagcgtggtcatgcccgacaatgtccagcgcgtcaaagtctatcgcgacgac
gttccgctgttttcacggttccagatcgaacaccagatcgaaacagcctattcgcgtacc
gtagaactgccttcgggcggctcggtcgtcatcgatcataccgaagcactggttgcggtc
gacgtgaactcggcacgctcgacccgcggcgccgacattgaagaaaccgcgctgcgcacc
aacctcgaagccgccgacgaagtggctcgccaattgcgcctgcgcgacctgggcggcctg
atcgtcatcgatttcatcgatatggaagaaggcaaaaaccagcgcgccgtcgaacagcgc
ctgcgcgacgccctgcatttcgatcgggctcgtgtccagatgggcaagatttcccgcttc
ggcctaatggaattgtcacgccagcgtctgcggccggccctgaacgaaggctcgcacatc
acctgcccgcgctgcaacggcaccggtgtcattcgcgacgccgaatccagtgcccttcac
gtcctgcgcctcttgcaggaagaggccatgaaagagaacacggcggcgctgcacgcccag
gtgccggtcgatgtggccaccttcctgctcaacgagaagcgcggcgacatcaccaagatc
gagtcgcgcctgaaggtcaacctggttctcatccccaacaagaatcttgaaaccccgcac
caccacatcgaacgcctgcgccacgacgaccctcgcctcgaagaaatcaagaccagcttc
gaactggcccaaagccccagtacagaagtcacctgggctcccaaagaacaggaaaccaag
gcgcgccccgaagcgctggtcaaaggcattaccccagcccaacccgctccagtgacatcc
acccccgagcgagccacggcggaaaaagccagcggcaccggcctgttcaagcgtttcatg
agctggattacaagttccagcacgccggccacacccgaatccaagacggaaaccagcgat
actcgctcatcggccagccgcaacaaaaccgcgcgcggcaccgatcgacgcgaacgcagc
catgaaggcggcgaccgcaatcgccagcgccgcggcaatcgccgcccggacaatctggaa
aacagcgtcgatgaaacccgccgccagccggtacgcaacgcccgtcgcagcgaaactgat
atcgacgacaacaaacccaggtccgagcaacgtccggccgaacaggccgacaccggcgac
acctccacgggcaatcgcaacggccgcaatcgtcgcggccgcggccgccgccgcgaggaa
aacccggctgaaacccaggttctggataccacggcagctgcctccatggcggccgaagat
cgtcccgtagctgaaacacttccgcgcaccgaagacatcccgcagcaggatgccgaaatc
gtttccgccgccatggcgccagatgccgagaacgaacagctcgatcccgaacgcaaacgc
cgtcgccgtcgcagccgtcgcggccgtcgtggttccgaagcaggcggcgccgagtctacc
ggcagcgaatcgcctgaaacaccggcccaggcgcacacccatttcgtagcgcacgaaacg
ccgtcattcaacccgacggcactcccggtggccgcagccactctgggcgcgttccccgcc
gtcctcgccgaggaacccgcgggcttcgcaccggccgtctcggccgtctccgccgtttcg
gcggaaccggtcgaagctcccgtgcgtaccatatcgccggagtccatcgaaaaagcgata
cacgcggaacatgtccacacagccgaagtcgcgccacagccggcggaggccccggcggaa
cacgtcgcagccgcagccagtcacgaagaggctgcccccgaggtagcgccgcccgcggca
agcccggtcgaaccaccagttcaaacggcaaccgtcgcggcaagcccggctccggtcgag
gccatagtccttggcacaacggcagaggccggcaatagcaccttgctgcgcgatactgtc
gttgccgccgggatggaatggatcgaaaccaaggctggctatcaagcccccgcgcccgca
gccccggttcgcctgggccgtgcccgcaaaccccgcgaccaggcttctcgcgaagaagcg
ctggaacaggttgaaacccacgcgggttaa
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