Paralcaligenes sp. KSB-10: LSG25_07850
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Entry
LSG25_07850 CDS
T07761
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
park
Paralcaligenes sp. KSB-10
Pathway
park03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
park00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSG25_07850 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
park03019
]
LSG25_07850 (pcnB)
Enzymes [BR:
park01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
LSG25_07850 (pcnB)
Messenger RNA biogenesis [BR:
park03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LSG25_07850 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
DUF2204
Motif
Other DBs
NCBI-ProteinID:
UHL65777
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Position
1726519..1727868
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AA seq
449 aa
AA seq
DB search
MLTETIKNFVSRLFAAPARGPERLPRDKHGIDRRNVSRHAIKVCEVLHENGFDAYIVGGA
VRDLIVGLEPKDFDVATNATPNQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPAS
VEQETDEFGRILRDNTFGTHEEDAIRRDFTFNALFYDPIKEEVIDFHHGFSDLKKRIVRM
IGDPETRYREDPVRMLRAMRFAAKLNATIDPATQAPIKKLANLIENVPASRLFDEMLKLL
TCGHAMDCLRQLRTVGLHQGLLPLIDLIFEETGGEQFVELALERTDGRVRAGKTISPSFL
FAALLWKLVDKRWQATVAKGEHSIQALMEAADSVMDEQTRKLAIQRRYQSDMREIWFMQP
RFERANGKTIWRLIEQPRFRAAVDFLQLRAEAREVDSVQAQWWMDLANADDGERAEMIEA
YMQQNKAAANPAKRRRRPRRNPGASTTPA
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgcttacagaaacaataaaaaactttgtcagccgattgtttgccgcgcctgcgcgaggg
cctgaacgcctgccgcgagacaaacacggcatcgatcggcgcaatgtctcgcgccacgcc
atcaaggtatgcgaggttttgcatgaaaacggcttcgacgcctacatcgtgggcggcgcc
gtacgcgacctgatcgtaggcctggaacccaaggatttcgatgtggccaccaacgccacg
cccaaccagattcgcccgctattccggcgcgcgcgcatcataggccggcgttttcaactg
gtccacgtggttttcgggcaggagatcatcgaaacgtccacatttcgcgcccccgcttcg
gtggaacaggaaaccgacgaattcgggcgaatactgcgcgacaacacctttggcacccac
gaagaagacgccatacggcgcgacttcactttcaatgcgcttttttacgatcccatcaaa
gaagaagtcatcgacttccatcacgggttcagcgacctgaaaaagcgcatcgtgcgcatg
atcggcgatcctgaaacccgttatcgcgaagatccggtacgcatgctgcgtgccatgcgc
tttgccgccaagctcaacgccacgatagatcccgccacgcaagcccccatcaagaagctg
gcaaatctgatcgaaaatgtgccggcttcgcgtctgttcgacgaaatgctcaagttgctc
acctgtggccacgccatggactgcctgcggcagttgcgtacggtcgggcttcatcagggc
ctgctgccgctcatcgatcttatcttcgaagagacgggcggtgaacagtttgtcgagttg
gcgctggaacgcaccgatggccgagtgcgggccggcaaaaccatcagccccagctttttg
tttgccgcgctgctctggaagctcgtggacaagcgctggcaagccacggttgccaaggga
gaacattccatccaggcgctcatggaagccgcggattcagtcatggatgaacaaacccgg
aaacttgccattcaacggcgctatcagtcggatatgcgcgaaatctggttcatgcagccg
cgcttcgaacgcgccaacgggaaaaccatttggcgcctgatcgaacagccccggtttcgg
gccgcagtcgattttctgcagttgcgcgctgaagcgcgcgaggtcgacagcgtccaggca
cagtggtggatggatctcgccaatgccgacgatggcgaacgcgccgaaatgatcgaggcc
tatatgcagcaaaacaaggctgccgcaaacccggcgaaacgccgcaggcgcccacgccgc
aatccgggcgccagcaccacaccggcatga
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