Paralcaligenes sp. KSB-10: LSG25_08305
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Entry
LSG25_08305 CDS
T07761
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
park
Paralcaligenes sp. KSB-10
Pathway
park03030
DNA replication
park03430
Mismatch repair
park03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
park00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LSG25_08305 (dnaE)
03430 Mismatch repair
LSG25_08305 (dnaE)
03440 Homologous recombination
LSG25_08305 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
park03032
]
LSG25_08305 (dnaE)
03400 DNA repair and recombination proteins [BR:
park03400
]
LSG25_08305 (dnaE)
Enzymes [BR:
park01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LSG25_08305 (dnaE)
DNA replication proteins [BR:
park03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LSG25_08305 (dnaE)
DNA repair and recombination proteins [BR:
park03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LSG25_08305 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HHH_3
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
UHL65850
LinkDB
All DBs
Position
complement(1832827..1836318)
Genome browser
AA seq
1163 aa
AA seq
DB search
MTEANISSPFVHLRVHSEFSVVDGIVQIPNLIEKAAEYGQPAVALTDLANIFGLIKFYKA
ARKSGVKPIAGCDVWLQNEEDRDKPCRLLMLVMNRQGYLNLCEILTKAWLDNQYRGRAEI
RREWLAGKEGLILISGARGGDVGQALEAGKEAEARALARDWARRFPDHYYIELQRTGVEG
DDAYVQAALKLALELNLPVVATHPVQFIAASDFRAHEARVCIAEGEQLANAKRVRRFTED
QYLLSSEEISRRFADIPSALANTVEIAKRCNLTLDLGKPRLPDFPTPEGVTLDDYLIELS
VKGLDVRMAQLFPDEQERQARYPAYSERLQWECKTITSMGFSGYFLIVADFINWGKHNGV
PVGPGRGSGAGSLVAYSLGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVID
YVKQKYGKEAVSQIATFGTLGAKAVVRDVGRVLDMPYMLCDGLSKMIPFNPADPWTLSRT
LEHEPAFKERYEQDEEVRALIDLARPLEGLTRNIGMHAGGVLIAPGKLTDFCPLYCQPGP
DSNAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRRFNEGLRDFDIMALPLDDHG
VYKLLSEGNTTAVFQLEGRGMKELLKNMQPNTFEDIIALLALYRPGPLESGMVVDFVNRK
HGRAEVDYFHSDLEAVLKSTYGVIVYQEQVMLISQVIGGYTLGGADLLRRAMGKKKAEEM
AKHREIFEKGAVEKGYDAALAVKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKAYHPT
EFLAATLSSDMDDTDKVQTFWKDALANGVEVLPPDVNASPYRFEPVADRYMKDGKPPRTM
RYGLGAVKGTGQGAVEEIIRAREEEGPFTSLFDFCRKVDRHTVNRRTIEALIRVGAFDQI
EENRAALLATVGNAIEAAEQAERSANQVSLFADDSNDIVEGELAKVLPWDLQTRLTQEKA
GLGFCFSGHLFDAWRDEVRRFAPKPLARLEASRSLQWFAGVLTSMRPKMTRRGKMLYAVL
DDGSAQVEVAIFNELYEQHRQRLKEDRLIIIQGKVSNDDYSGGFRVSAESIFDLQLAREA
RARTLRITLNGNADAVRLRQMLNPFRAEPENGVPGVPVEILLKRHDFLCTLRLGEEWRVR
MADTLFEQLNGWVEPDGVEIRYS
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagcaaatatttcatcccccttcgtacacctgcgcgttcactccgagttttcg
gtggtggacggcattgtgcaaatccccaacctgattgaaaaggcggccgaatacgggcag
cctgcggtcgccctgacagatctggccaatattttcggtttgatcaaattttacaaagcc
gcccgtaaatcgggcgtcaagccgattgccggctgcgacgtctggctgcagaacgaggaa
gatcgcgacaagccgtgccgattgctgatgctcgtgatgaatcggcaggggtatttgaat
ctttgcgaaatactgaccaaggcgtggctcgataatcaatatcgcgggcgggccgaaatt
cgccgcgaatggctggcagggaaagaagggttgatcctgatttcgggcgcccgcggcggc
gatgtcggacaagctctcgaggccggcaaagaggctgaggcacgggcactggcccgggat
tgggccagacgctttcccgatcactattacatcgagttgcagcggaccggggtcgagggc
gacgatgcctatgtccaggccgccctgaagctggcgcttgaattgaatttgccggtggtg
gctactcaccctgtgcagttcattgccgccagcgacttccgggcccacgaggcccgggtc
tgcatcgccgagggcgaacagctggccaatgccaagcgcgtgcggcgtttcaccgaagat
cagtatttgctgagttcggaagaaatatcgcgtcgctttgccgatattccgtcggcattg
gccaacacggttgaaattgccaagcgctgcaacctgaccctggatctgggcaagcctcgc
ctgccggatttccccacccccgaaggcgtgacgctggatgattacctgatcgagttgtcg
gtaaaagggctggacgtgcgcatggcccagctttttcctgacgaacaggagcgccaggct
cggtatcccgcttattccgaacgtcttcaatgggaatgcaaaaccattaccagcatgggc
ttttcgggttatttcctgatcgtggccgacttcatcaattggggcaagcacaatggtgtg
ccggttgggccgggacgcggttcgggggcgggctccctggtagcctattccctgggcatt
accgatctcgatcccatacgctacgatttgctgttcgaacgtttcctgaatccggaacgc
gtatccatgcccgacttcgatatcgacttctgccaggacaaccgcgaacgcgtcatcgac
tacgtcaagcagaaatacggcaaagaggcggtcagccagattgccaccttcggtaccctg
ggggccaaggcggtagtgcgcgacgtgggccgtgtgctcgacatgccgtatatgctgtgc
gatggcctgtccaagatgattccgttcaacccggccgatccatggaccctgagccggact
ctcgagcatgagccggcgttcaaggaacgctacgaacaggacgaagaagtgcgcgcgctt
atcgatctggcccggccgctcgaaggcctgacccgaaacataggcatgcatgccggcggt
gtgctgatcgctcccggcaagctgaccgatttctgtccgctgtattgccagccaggcccc
gacagcaatgcggtatcgcagttcgacaaagacgacgtcgaagctgccggcctggtgaaa
ttcgacttcctggggctgcgcaacctgacgatcctggattgggccgtgcgttatgtgcgc
cggttcaacgaaggtctgcgcgactttgacatcatggccctgcccctggacgaccatggg
gtatacaagctgctgagcgaaggcaatacaaccgccgtgttccagctggaagggcgcggg
atgaaagagctgctcaagaacatgcagcccaataccttcgaggatatcatcgccttgctg
gcgctttatcggccggggccgctcgagtccggcatggtggtcgatttcgtcaatcgcaag
cacggccgcgcggaagtcgattatttccacagcgatctggaggccgtgctcaagagcacc
tacggcgtgatcgtatatcaagagcaggtcatgctcatttcgcaggtgataggcggctat
accctgggcggcgccgatttgctgcgtcgtgccatgggcaagaaaaaggccgaggaaatg
gccaagcaccgcgagatattcgaaaaaggcgcggtcgaaaaaggctacgatgccgcactg
gcagtcaagctcttcgatttgatggaaaagtttgccggctatggcttcaacaagagccac
tcggccgcttatgcgctgattgcctatcagaccgcatggctcaaggcgtatcatccgacc
gagttcctggcggcaaccttgtcgtccgatatggacgacaccgacaaggtacagacgttc
tggaaagatgcgctggccaatggcgtggaagtcctgccgccggatgtgaacgcttccccc
taccgctttgaacccgttgccgatcgctacatgaaagacggcaagccgccgcgcaccatg
cgctacggccttggagcggtcaagggcacagggcagggcgctgtggaagaaataatcagg
gcgcgtgaagaagaaggcccgtttaccagcctgttcgacttttgccgcaaagtggatcgc
cacacggtaaatcgccgcactatcgaggccctgatacgcgtgggcgctttcgatcaaatc
gaagaaaaccgtgcggccctgctggctacggtaggcaatgcgatcgaagcggccgaacag
gccgagcgcagcgccaaccaggtatccttgtttgccgacgacagcaacgatatcgtcgag
ggcgagctggccaaagtgttgccctgggatttacagacacggctgacccaggaaaaagcg
ggtctgggtttttgcttcagcggccatctgttcgatgcctggcgcgacgaagtccgccgt
tttgctcccaagccgctggcgcgcctcgaggcttcccgcagtctccaatggtttgcaggc
gtcctgacttcgatgcggccaaaaatgacgcggcgcgggaaaatgttgtatgcggtactc
gacgatggctccgcgcaagtcgaggttgccattttcaatgaactgtatgagcagcatcgg
cagcgcctgaaggaagaccgcctcatcattatccagggaaaagtcagcaatgacgattat
tcgggagggttccgggtgtcggcggaatccatattcgatctgcaactggcgcgcgaagcc
cgcgcccgcacgctgcgcattaccctgaatggcaatgccgacgccgtacgcctgcggcag
atgctcaatccatttcgcgccgaacccgaaaacggcgtgccgggcgttccggttgaaatt
ttgctcaagcgccacgattttctttgcaccctgcggttgggcgaggaatggcgtgtacgc
atggccgataccttgttcgagcagctcaatggctgggtcgagcccgatggcgtggagatc
cgttactcatga
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integrated database retrieval system
