Paralcaligenes sp. KSB-10: LSG25_10335
Help
Entry
LSG25_10335 CDS
T07761
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
park
Paralcaligenes sp. KSB-10
Pathway
park03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
park00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSG25_10335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
park03019
]
LSG25_10335
Enzymes [BR:
park01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LSG25_10335
Messenger RNA biogenesis [BR:
park03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LSG25_10335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
DUF5713
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UHL62500
LinkDB
All DBs
Position
complement(2279656..2281059)
Genome browser
AA seq
467 aa
AA seq
DB search
MTEFTLSDTPATTFSDFGLHPNILKAVADTGYTIPTPIQAQAIPIVMDGRDVMGAAQTGT
GKTAAFTLPILHRLMPYASSSASPARHPVRALILTPTRELADQVSESVARYGSSTPLRSA
VVFGGVDIGPQRDALRRGCEILIATPGRLLDHVEQKNVNLGQVGILVLDEADRMLDMGFL
PDLDRIIRLLPAQRQGLLFSATFSNEIRKLARTFLNNPAEIEVAARNATADTVTQIAYPL
SGDDKRAAVVHLIKSRGLSQVIVFSNTKITTSRLARQLERDGVKAESIHGDKSQADRMKA
LEAFKAGELEVLVATDVAARGLDVAGIPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIA
FFSPAEERFLLDIEKLIKTKIPRGQLVLPPAARSSSPARDHSSSRDHQGGRRGNYSSGSS
SAKPLDDFFSRPYVPSASSSVAEVGAASPKAAAAKKSVGVLLGGRRQ
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgactgaatttactctatctgatacacctgccaccacgttttccgactttggtctgcat
ccgaacatcctgaaggctgtcgccgataccggctacaccatccccacgccgatacaagct
caagccatacccatagtgatggatggacgcgatgtgatgggggcggcgcaaaccggtacc
gggaagaccgccgcatttaccctgcccatactgcaccgcctgatgccgtatgccagcagc
agcgcctcgccggcgcgccatccggttcgagcgcttatcctgacgccgacccgcgaattg
gccgatcaggtttccgagagcgttgcccgctatggcagctctacgccattgcgctcggca
gtggtgtttggcggcgtcgatatcgggccgcagcgcgacgccttgcggcgcggctgcgag
atcctgatcgccacgccaggacgcctgctcgatcacgtcgagcaaaagaacgtcaatctt
gggcaagtcggcatcctggtgctcgatgaggccgaccgcatgctcgacatgggttttctg
cccgacctcgatcgcatcatccgcctgctgcccgcccagcgccagggcttgctgttttcg
gccacgttcagcaatgaaatccgcaagctggcccgcactttcctcaacaacccggccgag
atcgaagtggcggcccggaatgcgacggccgacacggtaacgcaaatcgcctatcctctg
tcgggcgacgacaagcgtgcggcggtggtgcatctgatcaaatcgcgcggtctgagccag
gtcattgtattttccaataccaagatcaccaccagccggttggcgcggcaattggagcgc
gacggcgtaaaggccgaatcgatacacggcgataaaagccaggccgatcgcatgaaagcc
cttgaagccttcaaggccggcgaactcgaagtactggttgcgaccgacgtggcggcccgt
ggcctggatgtggccggcataccttgcgtgatcaattacgacttgccgtataacgcggaa
gactacgtgcatcgcatcggccgtaccggccgtgccggagcctcgggcgaagccatcgct
tttttctcgcctgccgaagagcggttcctgctcgatatcgaaaaactcatcaaaacaaaa
attccgcgcggccaactggttctgccgcccgcggcgcgttccagcagtccggcccgcgac
cattcatcgagccgcgatcatcagggcggccgccgcggcaattattcttccggctcgtca
tcggcaaaaccgctggacgatttcttttccaggccctatgtgccttcggcttcttcctcc
gtagcggaagtcggcgctgcctcgcccaaggcagccgccgcaaagaaatcggtaggtgtg
ctactgggtggacgccgccagtag
DBGET
integrated database retrieval system
