Paralcaligenes sp. KSB-10: LSG25_11955
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Entry
LSG25_11955 CDS
T07761
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
park
Paralcaligenes sp. KSB-10
Brite
KEGG Orthology (KO) [BR:
park00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
park03016
]
LSG25_11955
Enzymes [BR:
park01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LSG25_11955
Transfer RNA biogenesis [BR:
park03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LSG25_11955
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Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
UHL62795
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Position
2623623..2625509
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AA seq
628 aa
AA seq
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MYVLYEDSGNFKAEKIFSQGDSSLQVESESGKRSKIKAATVLFQFEQPSPAALLEQAQAL
AATLEIDFLWECAPQEEFEASHFAEDYFGHTPSSIEKAALIFALNSAPAYFHRRGKGHYR
PAPPDILAAALAAIEKKQKQAAQQQEWTDQLVAGTLPGPIAEIADTLLTRPDKNTLQWKA
FEAALAQLQISPERLLLKLGAWPHPLALHQHRFLSAHFPKGTGFAPIDLPEIGTDLPLSA
VEAYSVDDTSTTEIDDALSIENIDETTVRVGIHIAAPGLAITRGSELDKLARARMSTVYF
PGQKIPMLPDELIQAFSLNAGEPRPALSLYVTARLDTGEILSSETRLERIQVRENLRHNL
LDELITEEALNDPQAALPHAHWLRPLWQLAQRLSAQRDLVRGKPENNNRVEYSFYLEGSP
HDPDTPVQLVPRKRNAPLDRLVAEYMILTNNIWGGLLAGHGVPGIYRSQQAGRVRMSTQA
LPHEAIGVPQYAWSTSPLRRYVDLVNQWQILAAAEHGVSARLVAPFKPKEADLFAIIGAF
DAQYATWNEFQNAMERYWCLRWLQQQGLRTVQASVLREDLVRLCCAPFVARIPALPELER
GQIINLEILGFDELALELDCRYLDTVTA
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtacgttctttatgaagacagcggaaatttcaaggcggaaaagattttttcgcaaggc
gactcaagtctgcaagtcgagtccgaatcgggcaaacgcagcaaaataaaagccgccacc
gtactattccaattcgagcagcccagcccggccgccctgctcgaacaggcacaagcgctt
gccgccaccctggagatcgactttctatgggaatgcgccccccaggaagaattcgaagcc
tctcatttcgccgaagattacttcggacatactcccagctccatcgaaaaagccgccctt
atttttgccttgaacagcgccccggcctattttcatcggcgcggcaaggggcactaccgg
cctgccccgcctgacatcctggcagccgccctggccgccatcgaaaaaaaacagaaacag
gccgcacaacagcaggagtggaccgaccagctggtggcgggaacgctgcccggcccgatt
gccgaaatcgccgataccctgctcaccaggcccgacaaaaacaccctgcaatggaaagcc
ttcgaagcagcgctcgcgcagcttcaaatcagtccggaacggctgttgctcaagcttggc
gcctggccccaccccctggccctgcatcagcatcgatttttatcggcccattttcccaaa
ggcaccgggttcgcgccgatcgacctgcctgaaatcggcaccgacctgccattgagcgcc
gtggaggcctattcggtcgacgataccagcaccactgaaatcgacgacgccctgtccatt
gaaaacatcgatgaaacaacggtgcgcgtgggaatccacatagccgcaccgggcctggcc
atcacccgcggcagcgaactggacaagctggcccgtgcgcgcatgtcgaccgtttatttt
ccgggccagaaaatccccatgctgcccgacgagctgatccaggccttctcgctcaacgcc
ggcgagcccaggcccgccctgtccctgtacgtaacggccaggctcgacacgggcgagatc
ctgtcgtccgagacgcgactcgaacgcatacaggtccgtgagaatctgcggcacaatctg
cttgacgagctcatcaccgaagaagccctgaacgatcctcaagccgcgctgccgcatgcg
cattggctgcgccccctgtggcaacttgcccaacgcctgagcgcccagcgcgacctggtg
cgcggcaagcccgaaaacaataatcgcgtcgaatattcgttttatctggaagggtccccc
cacgatcccgatacccctgtgcagcttgttccgcgcaagcgcaatgccccgctggacagg
ctggtcgccgaatacatgatactgaccaataatatctggggcggcttgctggcagggcat
ggcgtaccgggcatttatcgctcccagcaggcggggcgcgtacgcatgtccacccaggcc
ttgccccacgaagccatcggggttccgcagtatgcgtggtccacctctcctttgcggcgc
tatgtcgatctggtcaatcagtggcaaattctggccgctgccgagcatggggtttcggcg
cgcctggtcgctcccttcaagcccaaggaggccgatttattcgccattatcggcgcgttc
gacgcccagtacgccacctggaacgaattccagaatgcgatggagcgctactggtgcctg
cgctggctgcagcaacaaggattgcgcaccgtacaggccagcgtcctgcgcgaagatctg
gtacggttgtgttgtgcgccgtttgtcgcccgtattccagccttgccggaattggaacga
gggcagatcatcaatctggaaattctcgggtttgacgaacttgccctcgaactggattgc
cgctacctggacaccgttacggcataa
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