Paralcaligenes sp. KSB-10: LSG25_15225
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Entry
LSG25_15225 CDS
T07761
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
park
Paralcaligenes sp. KSB-10
Pathway
park02020
Two-component system
park02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
park00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LSG25_15225 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LSG25_15225 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
park03021
]
LSG25_15225 (rpoN)
Transcription machinery [BR:
park03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LSG25_15225 (rpoN)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
ENOX1
HTH_AraC
FliH
Motif
Other DBs
NCBI-ProteinID:
UHL63392
LinkDB
All DBs
Position
complement(3297507..3298922)
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AA seq
471 aa
AA seq
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MQNIVPMQSRQSLELRHHQQLTLTPQLQQSIRFLQLSAQDLENEIAQAMLDNPLLERQEE
YDIDTADAEPGEPDSPREDWSLLALPNRGDDPDGEPTRPEAAQAETLQQHLLRQLHLTRA
LPRDIALVTLLIEELDENGYLLSSLEEIAACLPPEIEIDADELATALSLLQSFDPPGVGA
RSLADCLLLQMDQSEAVKGCDASVVACARQLARRHLDLLASGNLGKLCEALSCTHETLSR
AHRVLLALEPRPGRAWASSLADYVNPDVLVRKVRNRWLASLNPAVMPRLRVNAQYEHWLA
REQGRGLLHEQLQQAYGLIKSVGQRFETILRVTQAIVDRQQEFFEQGMQGMRPLLLRDIA
DELAMHESTVSRATRQKYVTTPWGVFELKRFFGAALGTDDGTATSAAAVRSLILKLVSEE
SGKKPLSDSQIALRLNEQGVVIARRTVAKYREAAGIEPASLRKARASLELR
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatattgtacctatgcaatcgcgccagtccctagaacttcgtcatcatcagcaa
ttgacgctgacccctcagctgcagcaatcgattcgattcctgcagctatcggcgcaagat
ctggaaaatgaaatcgcccaggcaatgttggacaaccccttgcttgaacggcaggaagag
tatgacattgatacggccgatgcggaacccggcgagcccgactcgccgcgcgaggactgg
tcattgttggctttacccaaccgcggcgacgaccctgacggcgaaccgacgcggcccgag
gcggcgcaggcggaaaccctgcagcagcatttattgcgccaactgcatctgacgcgggcg
ctacccagggatatcgcgctggtaacgctgttgatcgaggaactggacgaaaatggctac
ttgctgtcgtccctggaggaaatcgcagcctgtttgccgcccgagatcgaaatcgatgcc
gatgaactggccacagccttgagcttgctgcagtcctttgatcctcccggagtaggcgcg
cggtcgctggcagactgcctgttgttgcaaatggatcagtccgaagcagtaaaagggtgc
gatgcgtccgtagtggcttgcgcccgccaactggcccggcggcatctcgatttgctggcg
tcgggcaatttgggcaaattgtgcgaggccctgtcctgcactcacgagaccctcagccgg
gcgcatcgcgtgctcctggcgctggaacccaggccaggacgcgcctgggcaagctcgctg
gccgattatgtcaaccccgacgtgctggtgcgtaaagtcaggaatcgatggctggcgagc
ctgaatcccgcggtaatgccccgcttgcgcgtcaatgcccagtacgagcactggctggcc
cgggagcagggccgcggcctgctgcacgagcaattgcagcaggcctacggattgatcaag
agcgttggccagcggttcgagacgattttgcgcgtgacgcaagccatagtcgatcggcag
caggagtttttcgagcagggcatgcaaggcatgcgccccctgctgttgcgcgatatcgcc
gacgaactcgcgatgcacgagtcgactgtgtcgcgagccacccggcagaaatatgtgacg
acgccctggggcgttttcgaactgaaacgttttttcggtgctgcgttgggcaccgatgac
ggcacggccacttcggcggcggctgtacggtccctgatcctcaagctggtgtccgaggaa
tcgggcaaaaagcctctgtccgatagccagatagcgctcaggctgaatgagcagggcgtt
gtgattgcgcgccgtacggtggcgaaataccgcgaggcggcgggcatagagccagcctcg
ctgcgtaaggccagggcctccctggagctgcgttag
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