Paralcaligenes sp. KSB-10: LSG25_16245
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Entry
LSG25_16245 CDS
T07761
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
park
Paralcaligenes sp. KSB-10
Pathway
park03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
park00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LSG25_16245 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
park03021
]
LSG25_16245 (rpoB)
03400 DNA repair and recombination proteins [BR:
park03400
]
LSG25_16245 (rpoB)
Enzymes [BR:
park01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LSG25_16245 (rpoB)
Transcription machinery [BR:
park03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LSG25_16245 (rpoB)
DNA repair and recombination proteins [BR:
park03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LSG25_16245 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
UHL63572
LinkDB
All DBs
Position
3537767..3541879
Genome browser
AA seq
1370 aa
AA seq
DB search
MPYSYTEKKRIRKSFAKREDVQDVPYLLATQLQSFLTFLQADTTPSKRKDEGLQAAFTSI
FPIVSHNQMARLEFVSYVLGEPVFDVKECQLRGLTYASPLRAKVRLVLMDREVSKPTVKE
VKEQEVYMGEIPLMTDTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGMTPESILAHFFDFDNFEIKNEG
GMLEFVPERWKGEVARFDILDRSGKVIVEKDKRINAKHLRDLSAANVEYVSVPEDFLLGR
VLAKNVINAETGEIIANANDEITESVLGEFRAANIRETQTLYTNDLDRGPYISQTLRTDE
TADQMAARVAIYRMMRPGEPPTEDAVEALFQRLFYSEDAYDLSRVGRMKVNSRLGRGDDI
TGAMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETPYRKI
VDGKVSEQIDYLSAIEESHYVIAQANAELDEEGRFTDDLVACREAGETMLTAPANVHYMD
VAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDSGT
TVQALRGGLVDHVDAERVVIRVNDDENVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKRG
DKVARGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSIHIE
ELTVVARDTKLGQEEITRDISNLAETQLNRLDDSGIVYIGAEVRADDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMIGTVIDVQVFTREGIERDKRAQSIIDDELR
RYRQDLNDQLRIVEDDTFDRIEKFLVGKTVNGGPRKLAKGAVLAKDYLADLDRWQWFDIR
LADEAHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVKRRLQ
PGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPLGVPSRMNIGQVLEVHLGWAA
KGVGQRIADMIGEEKVVQVKGIRSYLEQVYNNTGTGARISDLTDDEVIELARNLKNGVPF
ATPVFDGATEAEITQMLELAYPDDVAERLKLTESRTQAWLFDGRTGEQFERPVTIGYMHY
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLT
VKSDDISGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLSLDMDLERK
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgccttattcgtataccgaaaaaaagcgcatacgtaagagcttcgccaaacgtgaggac
gttcaagacgttccttacttgctggcgactcaactgcaatcgtttttaacctttttgcag
gcggatactacaccttctaaacgtaaagatgaaggcctgcaagcggctttcacttccata
tttcctatcgttagccataatcagatggcacgcctcgagttcgtaagctacgtgctcggc
gagcccgtgttcgacgtcaaagaatgccagctgcgtggcctgacctacgcttcgcccctg
cgcgccaaggtgcgcctggtgctgatggatcgcgaagtcagtaagcctaccgtcaaagaa
gtaaaagagcaagaagtctatatgggcgaaattccgctcatgaccgatacgggctcgttc
gtaatcaacggcaccgagcgcgtcatcgtgtcgcagctgcatcgttcgcccggggtgttc
ttcgagcacgatcggggcaagacccacagttcgggcaaattgctgttttcggcgcgtgtg
attccttaccgcggttcgtggctcgacttcgagttcgatcccaaggacgtgttgtttttc
cgggtcgatcgccgccgcaagatgccggtcacgattctgctcaaggcgatcggcatgact
cccgaatcgatcctggcgcacttcttcgatttcgataatttcgaaatcaagaacgaaggc
ggcatgcttgagttcgtgcctgaacgctggaagggtgaagtggcccgtttcgatattctc
gatcgctccggcaaggtcatcgtcgaaaaagacaagcgtatcaatgccaagcatttgcgc
gatctgtcggccgccaacgtcgaatacgtttcggttccggaagacttcctgctgggccgg
gtattggccaaaaacgtgatcaacgccgaaaccggcgaaatcattgccaatgccaacgac
gaaatcaccgagtccgtgctgggcgaattccgcgcggccaatattcgcgaaacccagacc
ttgtacaccaatgatctggatcgcggtccctatatttcgcaaaccctgcgcaccgatgaa
acggccgatcaaatggcggctcgcgttgccatctatcgcatgatgcgtcccggcgaacct
cctaccgaggatgccgtcgaagccttgttccagcgcctgttctacagcgaagacgcctac
gatctgtcgcgcgtcggccgcatgaaggtcaacagccgtctgggccgtggcgacgacatc
acgggcgccatgaccctgaccaacgaagacatactcgaaaccatcaaggtgctggtcgag
ttgcgtaacggccgcggccagatcgatgatatcgatcaccttggcaatcgtcgcgtgcgc
tgtgtcggcgaactggccgagaaccagttccgggccggcctggtacgtgtcgaacgcgcg
gtcaaagagcgcctcggtcaggctgaaaccgaaaatctgatgccgcacgacttgatcaac
tccaagccgatttcggcggcgatcaaggaattcttcggttcgagccagctgtcgcagttc
atggatcagaccaaccccttgtccgagatcacgcacaaacgccgtgtatcggctttggga
cctggcggcttgacgcgcgagcgtgcgggctttgaagtgcgcgacgtgcacccgactcat
tatggccgggtttgccctatcgaaacgcctgaaggcccgaacatcggcctgatcaattcg
atggccctgtacgcgcgtttgaacgaatacggctttcttgaaacgccctaccgcaaaatc
gtcgacggcaaagtcagcgaacaaatcgactacctgtcggctatcgaagaaagccactac
gtgattgcccaggctaacgccgagctcgacgaagaaggccgtttcaccgacgacctggtt
gcctgccgcgaagccggcgaaaccatgctgacggctccggccaacgtgcactacatggac
gtggcgccttcgcagatcgtatcggtggctgcctcgctgattcccttcctcgagcacgac
gatgccaaccgcgcgctcatgggcgccaacatgcaacgccaggccgtaccttgcctgcgc
cctgaaaagcccctggtaggcaccggaatcgaacgcacagtggcggtcgactcgggtact
acggtgcaggccttgcgtggcggtctggtcgatcacgtcgatgccgagcgtgtcgtgatc
cgcgtcaacgacgacgagaatgtcgccggcgaggtgggtgtcgatatctacaacctcatc
aagtacacacgctccaaccagaacaccaacatcaaccagcgccctatcgtcaagcgtggc
gacaaggttgcccgcggcgacgttctggccgacggcgcgtcgaccgatctgggcgaactg
gcattgggccagaacatgctgatcgcgttcatgccctggaacggctataacttcgaggat
tcgatcctgatttccgaaaaggtcgtggccgacgatcgctatacttcgatccacatcgaa
gaactgacggtcgtggcgcgcgataccaagctgggtcaggaagaaatcacccgcgacatc
agcaatctggccgagacgcaactcaatcgcctggacgactcgggcattgtgtacattggt
gccgaagtgcgtgccgatgatgtgctggtcggcaaagtgacgcccaaaggcgaaacccag
ctgactccggaagaaaagttgctgcgcgccatttttggcgaaaaagcctccgacgtcaaa
gatacttcgctgcgcgtgccttcgggcatgatcggtacggttatcgacgtccaggtcttt
actcgcgaaggcatagaacgcgacaagcgcgcccagtcgatcatcgacgacgagctgcgt
cgctatcgccaggatctcaacgatcagctgcgtatcgtggaagacgataccttcgatcgt
atcgagaaattcctggtcggcaaaaccgtcaatggcggccctcgcaagctcgccaagggc
gccgtgctggccaaggattacctggccgacctggatcgctggcagtggttcgatatccgc
ctggccgacgaagcgcatgccgtggtgctggaacaggccaaggaatcgctggagcagaag
cgccaccagttcgatctggcgttcgaagaaaagcgcaagaaactcacccagggcgacgag
ctgcctccgggcgtgctcaagatgatcaaggtgtatctggccgtcaagcgccgcctgcag
cctggcgacaagatggccggccgtcacggcaacaagggtgtggtctcccgtattacgcct
gtcgaagacatgcctcatatggccgacggcactcccgccgacatcgtgctcaatcccctg
ggcgtgccttcgcggatgaatatcggccaggtgcttgaagtgcacctgggctgggccgcc
aaaggcgtgggtcagcgcatcgccgacatgatcggcgaagaaaaggtggtgcaggtcaag
ggtatacgttcttatctggagcaggtatacaacaataccggcaccggcgcgcgcatatcg
gaccttacagacgacgaagtcatcgaactggcccgcaatctcaaaaacggcgtgccgttt
gcgacgccggttttcgacggcgcgaccgaagcggaaatcacccagatgctcgagctggcc
tatcctgacgatgtggccgaacgcctcaagctgacggaatcgcgcactcaggcctggctg
ttcgatggccgtaccggcgaacaattcgaacgtcctgtcacgatcggctatatgcactat
ctcaagctgcatcacctggtcgacgacaagatgcatgctcgctctaccggtccttactcg
ctggttacgcagcaaccgctgggcggcaaagcccagttcggcggccagcgtttcggcgag
atggaagtctgggcgctggaagcctacggtgcttcgtataccttgcaggaaatgctcacg
gtcaagtccgacgacatctccggccgtaccaaggtctacgagaacatcgtcaagggcgac
cacgtcatcgatgccggtatgccagagtcgttcaacgtgttggttaaagaaattcgatcc
ctgtctctcgacatggatctggagcgtaaataa
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