Paralcaligenes sp. KSB-10: LSG25_16250
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Entry
LSG25_16250 CDS
T07761
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
park
Paralcaligenes sp. KSB-10
Pathway
park03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
park00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LSG25_16250 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
park03021
]
LSG25_16250 (rpoC)
03400 DNA repair and recombination proteins [BR:
park03400
]
LSG25_16250 (rpoC)
Enzymes [BR:
park01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LSG25_16250 (rpoC)
Transcription machinery [BR:
park03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LSG25_16250 (rpoC)
DNA repair and recombination proteins [BR:
park03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LSG25_16250 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
UHL63573
LinkDB
All DBs
Position
3541879..3546123
Genome browser
AA seq
1414 aa
AA seq
DB search
MKALLDLFKQVSQDEQFDAIKIGIASPEKVRSWSYGEVRKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFHALM
GAEAVRELLRTIDIDRDVETLRAELKATSSDAKIKKISKRLKVLEGFQKSGIKPEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIILRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQIEA
RTLMLASNNILFPANGEPSIVPSQDIVLGLYYTTRERINGKGEGLFFMDVSEVQRAYDNR
EVELQSRVTVRLNEFEKDADGEWQPVLRRFETTVGRALLSEILPKGLPFSVLNRALKKKE
ISRLINQSFRRCGLRATVIFADKLMQSGFRLATRGGISIAMGDMLIPRVKEDILAQASKE
VKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVGKAMMEQLATEPVTNRHGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEPDCGTTRGYSMKALVEGGEIIEPLRDRIL
GRVAAVDIVNPETQETAITAGTLLDEDLVEQIDLLGVDEVKVRTPLTCETRHGLCAHCYG
RDLGRGSMVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAMASSIETKSTGSIGF
AITMRYVTNAKGERIAISRSGEIVIFDDNRRERERHKVPYGATVLVGDSEAVKAGQRLAS
WDPLTRPIVSEYAGQVRFENIEEGGTVAKQVDEVTGLSTLVVITPKTRSGKTMLRPQIKL
INEAGEEVKIAGTDHSVNISFPVGALITVRDGQQVTVGEVLARIPQESQKTRDITGGLPR
VAELFEARSPKDAGMLADITGTVSFGKDTKGKQRLVITDLDGVGHEFLIPKEKQVLVHDG
QVVNKGEMIVDGPADPHDILRLQGIERLASYVVNEVQDVYRLQGVKINDKHIEVIVRQML
RRVNIVDAGDTSFIPGEQVERSELLNENDRMEADGKLPATYDNVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGMAYHLARKDKELLEAAERQ
AARALANPFEDAPAATEEVPLASADAGDTSESAE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctactcgaccttttcaaacaagtctcgcaagacgagcaattcgatgccatc
aagatcggcatcgcgtcgcccgaaaaagtgcggtcctggtcttacggcgaagtccgcaag
cccgagactatcaactatcgtaccttcaagcccgagcgtgacggcctgttctgcgccaag
atttttggcccgatcaaggactacgagtgcttgtgcggcaaatacaaacgcctgaaacac
cgcggcgtcatttgcgagaaatgcggcgtcgaagtcacggtggccaaggtgcgtcgcgag
cgcatgggccatatcgagctggccagtccggtggctcacatctggttcctgaaaagcctg
ccatcccgcctgggcatggtgctggacatgaccctgcgcgacatcgagcgcgtgctttat
ttcgaagcatggtgcgtaatcgagcctggcatgaccccgctcaagcgcggtcagatcatg
tccgatgacgatttcctggccaagaccgaagaatacggcgacgacttccatgcgctcatg
ggcgccgaggcggtccgcgagttgctgcgtacgatcgatatcgatcgcgacgtcgaaacc
ctgcgcgccgagctcaaggccacgtcgtccgacgccaagatcaaaaagatttccaagcgc
ctcaaagtgctggaaggcttccagaaatcgggcatcaagcccgagtggatggtcatggaa
gtcctgccggttctgccgcccgacttgcgtccgctggtgccgctcgatggcggccgcttc
gctacctcggatctgaacgacctgtatcgccgcgtcatcaaccgcaacaaccgactgaaa
cgcctgctggaactgaaggcgcccgatatcattctgcgcaacgagaaacgcatgctgcag
gaatcggtcgactccctgctcgataacggtcgtcgcggcaaagccatgactggtgccaac
aagcgccagctcaaatcgctggccgacatgatcaagggcaagagcggccgtttccgccag
aacctgctgggcaagcgtgtcgactactccggccgttcggtgattgtggtgggtccgcag
ctcaagctgcatcagtgcggcttgcccaagctgatggctttggaattgttcaagccgttc
attttcaaccgcctcgaaatgatgggcctggccacgaccatcaaggctgccaagaagctg
gtggaaagccaggagccggtggtgtgggatattctcgaagaggtcattcgcgaacaccct
gtcatgctcaaccgtgcgcccacgctgcaccgcctgggcatccaggccttcgaaccggtc
ctgatcgaaggcaaggccattcagctgcatccgctggtttgcgcggcattcaacgccgac
ttcgacggcgatcagatggcggtacacgtacccctgtcgcttgaagcgcagatcgaagcg
cgcacgctgatgctggcttcgaacaacattctgttcccggccaacggcgaaccgtcgatc
gtgccttcgcaggatatcgttctgggtctgtattacacgacgcgcgaacgcatcaacggc
aagggcgaaggcctgttcttcatggacgtgtccgaagtccagcgcgcttacgacaatcgc
gaagtcgagctgcaaagccgcgtcaccgtgcgtctgaacgagtttgaaaaagacgccgat
ggcgaatggcagccggtgctgcgacgcttcgaaaccacggttggacgtgccctgctttcc
gagattctgcccaagggcttgccgttctcggtgctgaatcgcgcgctgaagaaaaaagag
atctcccgtctcatcaatcaatcgtttcgtcgctgcggcttgcgggccacggttattttt
gccgacaagctgatgcagtcgggtttccgcctggccacgcgcggcggcatctcgattgcc
atgggcgatatgctgattccccgtgtcaaggaagatatcctggcgcaggccagcaaagag
gtcaaagagatcgacaagcagtactcgtcgggtctggtgacgtcgcaggaacgctataac
aatgtggtcgatatctggggcaaggccggcgataaagtcggcaaggccatgatggaacaa
ctggcaaccgaacccgtgaccaatcgtcatggcgaagaagtgcgccaggaatcgttcaac
tcgatctacatgatggccgactcgggcgctcggggttccgctgcgcagattcgccagctg
gccggtatgcgaggcctgatggccaagcccgatggctccatcatcgagacgccgatcacg
gcaaatttccgtgaaggtttgaatgtattgcagtatttcatctcgacgcacggtgcgcgt
aaaggcctggccgataccgcgctgaagacggcaaactcgggctacctgacgcgccgcctg
gtcgatgtgactcaggatctggtcattaccgagcccgattgcggcacgacacgcggctat
tccatgaaagccctggtcgagggtggcgaaatcatcgagcctttgcgcgatcgtattctg
gggcgtgtagcggcagttgatattgtcaatcctgaaacccaggaaacggccattacggca
ggcactctgctcgacgaagatctggtcgaacagatcgatctgctgggtgtggatgaagtc
aaggtgcgtacgcccctgacttgcgaaacgcgccatggtttgtgcgcgcattgctacggc
cgcgatctgggccgtggttccatggtgaacaagggcgaggccatcggtgtgatcgccgcc
cagtcgattggcgaaccgggcacgcagctgaccatgcgtaccttccacatcggtggtgcg
gcatcccgcgcggcgatggccagctcgatcgaaaccaagtcgaccggcagcattggtttc
gccatcaccatgcgttacgtgactaacgccaaaggcgaacgcattgccatttcccgttca
ggcgaaatcgtgattttcgacgacaatcgccgcgagcgcgaacgccataaggttccttat
ggcgcgaccgtcctggtgggcgacagcgaagcggtcaaggccggccagcgtttggcttcc
tgggatccgctgacccgtccgattgtgtcggaatacgcaggtcaggtacgcttcgagaat
atcgaagaaggcgggacggttgccaagcaggtcgatgaagtcaccggtttgtccacgctg
gttgtcattacgcccaaaacgcgtagcggcaaaaccatgctgcgtccgcaaatcaagctg
atcaacgaagccggcgaagaagtgaaaatcgccggcaccgatcactcggtcaatatctcg
ttcccggttggggccctgattaccgtgcgcgatggccagcaggtcacggtgggtgaagtt
ctggcgcgtattccccaagagtcgcagaaaactcgcgatatcaccgggggtctgccacgt
gtggccgagctgttcgaagcccgttcgcccaaagatgccggcatgctggccgacattaca
ggcacggtttcgttcggcaaggataccaagggcaagcagcgcctggtcattaccgacctt
gatggcgtgggccatgagttcctgattccgaaagagaagcaggtcctggttcacgatggc
caggtcgtcaacaagggcgaaatgattgtcgatggcccggccgatccgcacgatattctg
cgtttgcagggcatcgagcgcctggccagctatgtggttaacgaagtgcaggatgtgtat
cgcttgcagggcgtgaaaatcaacgacaagcacatcgaagtgatcgtgcgccagatgctg
cgtcgcgtgaacattgtcgatgccggcgataccagcttcattcctggcgaacaggtcgag
cgttccgagttgctcaacgaaaacgatcgcatggaggccgacggcaaattgccggctacc
tacgataacgtcttgctgggcattaccaaggcctcgctgtcgaccgattcgttcatttcg
gcggcatcgttccaggaaacgacccgggtgctgacggaagcggccatcatgggcaagcgc
gacgatttgcgtggcttgaaagaaaacgtgattgtcggccgcctgattccagccggtaca
ggcatggcctatcacctggcgcgcaaagacaaagagctgcttgaagcggctgaacgtcaa
gccgctcgtgcgctggccaatccgtttgaagatgcaccggctgcaacggaagaagttccg
ttggcttcggccgatgcgggcgacacgtcggagtccgccgagtaa
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