Paralcaligenes sp. KSB-10: LSG25_16525
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Entry
LSG25_16525 CDS
T07761
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
park
Paralcaligenes sp. KSB-10
Pathway
park02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
park00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LSG25_16525 (pdeR)
Enzymes [BR:
park01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
LSG25_16525 (pdeR)
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Motif
Pfam:
EAL
GGDEF
PAS
PAS_9
PAS_4
Motif
Other DBs
NCBI-ProteinID:
UHL66399
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Position
3602618..3604609
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AA seq
663 aa
AA seq
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MDDDVTESLLFTYFGTRSPFWQLSADSDALQLAGVKGIPNLAVALVPEQAREIRAFSGVT
SHAEIDIKLFGESQKLSLVGKKNGANSWSGTASDYMDTPTVAKDLAHGLEFAEQVISEVN
SLVVIIDHNSNILRFNRLCEEVTGLREKDVIGKNAHAFMRSDEQAASRANISDFFKNSSS
YEVERHINTLNGPRTILWRNKFVQSGSGPDERYLVCSGTDVTEERKAQAKLLELATVDTL
TGLPNRHAIYEKITASLQSGDRFGILFLDLDNFKQVNDHYGHLVGDSLIQAVALNIKACM
REGDSVARLGGDEFLVLVQNASFALMESVAQRITDRLKNPISLGLIEVYTGCSIGIALCP
EHGDTLDHLIRCADTAMYVAKDAGKRTYRVFSPDMDNRVSEFVWLDVNLRKALDADDQLV
LYYQPKLCLKTGVVRSVEALLRWDSPDRGRIQPLDFISYAEDSGLIVPLGRWVMRTAAKQ
AAAWKARGLDIRVAINVSARQLCSSTVVQDFAEALRQAGQTQCLLDLELTESCLVDDEAL
AHAVIRQFRDLGAQVHLDDFGTGYSSLSQLARLPLDVIKLDRSFISSINENATSQALVRS
MVAVAQQLKFKVVAEGVETEAEAEFLKSIDVDDAQGYLYGRPMPAKEFEEWLNNKGKKLR
LVA
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
ctggatgacgacgtaaccgaatcactgctgtttacctattttggtactagaagccctttc
tggcagctttcggctgacagcgatgctttgcagctggctggcgtcaagggcatcccaaac
ctggctgttgcgctggtgcccgagcaggcacgtgaaatccgggccttctcgggggtgacc
tcgcatgcagaaatagacatcaagctttttggcgaatcccagaaactgagcctggttggc
aagaagaatggcgccaattcctggtcgggaaccgcgtccgactacatggacacgcccacc
gttgccaaagatctcgcgcacggactcgagttcgccgagcaagtcatatccgaagtgaat
tccctggtggtcatcatcgaccacaacagcaatatcctgcgattcaaccgcctgtgcgaa
gaagtgaccggcttgcgcgaaaaagacgtaatcggcaaaaatgcgcatgctttcatgcga
tccgacgaacaggcggcttcgcgcgccaacatcagcgatttctttaaaaattcctcgtcg
tacgaagtcgagcgccatatcaacacgctcaacggcccgcgtacgatcctgtggcgcaac
aaattcgtgcaaagcggcagcggtcccgacgaacgctacctggtctgctcgggtaccgat
gttaccgaagagcgcaaggcccaggccaaattgctcgagcttgccactgtcgatacgctg
accggcttgccgaaccggcacgccatctacgagaaaatcacggcatccctgcaaagcggc
gatcgcttcggcattcttttcctcgacctcgataacttcaagcaggtcaacgatcactat
ggccatctggtcggcgacagtctcatccaggccgtggccctgaatatcaaggcctgcatg
cgcgagggcgacagcgttgcccgccttggcggcgacgaattcctggtcttggtccagaat
gcctcgttcgccctgatggaaagtgtcgcgcagcgaattaccgatcgtctcaagaacccg
atcagcctggggttgatcgaagtctataccggttgctcgatcggcattgcgctctgcccc
gaacatggcgatacgctggatcacctcattcgctgtgcggatacggccatgtacgtagcc
aaagacgccggcaaacgcacgtatcgcgtgttctcgcccgatatggacaacagggtttcc
gagttcgtctggctggacgtcaacttgcgcaaagccctcgatgccgacgaccaactggtg
ctttattaccagcccaagctgtgcctgaaaactggtgtggttcgcagcgtcgaggccttg
ctgcggtgggactcgcctgaccgcgggcgcatacagcctctggatttcatctcgtacgcc
gaagactctggcctgatcgttccgctgggtcgctgggtcatgagaacggcggcaaaacag
gccgcggcctggaaagctcgcggtttggatattcgcgttgcgataaacgtatccgcgcgc
cagttgtgcagctcgacggttgttcaggattttgccgaagcgctgcggcaggccggccag
actcaatgcctgctcgacctcgaactgaccgaaagctgcctggttgatgacgaagccctg
gcccatgccgtgattcgccagttccgcgacctcggggctcaagttcacctcgacgatttc
ggaaccggctactcttccctatcccaattggcccgcctgccgctcgatgtgatcaagctg
gatcgcagtttcattagctccatcaacgaaaatgccacctcgcaggcgctggtccggtca
atggtcgcggtcgcacagcaactgaagttcaaggttgttgcggaaggcgttgaaaccgaa
gcggaagccgaattcctcaagagcatcgatgtcgatgacgcccagggttacctgtatggg
cggcctatgccggcaaaagagttcgaggaatggctcaacaacaagggcaagaagctacgg
ctcgtagcctga
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