Pectobacterium araliae: PEC302110_06280
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Entry
PEC302110_06280 CDS
T10257
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
parl Pectobacterium araliae
Pathway
parl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
parl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PEC302110_06280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parl03019
]
PEC302110_06280
03009 Ribosome biogenesis [BR:
parl03009
]
PEC302110_06280
Enzymes [BR:
parl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PEC302110_06280
Messenger RNA biogenesis [BR:
parl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PEC302110_06280
Ribosome biogenesis [BR:
parl03009
]
Prokaryotic type
rRNA helicases
PEC302110_06280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
BES83531
UniProt:
A0AAN0KCU5
LinkDB
All DBs
Position
710844..712736
Genome browser
AA seq
630 aa
AA seq
DB search
MTDLFTSFSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
ALPLLNNLKPELKAPQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQLR
ALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLTKLQPQEELDIET
LAAALLKMAQGERPLILPPDPAFRPRREFRDRDESRGDSRGDRRRDPRDSREPREGDRPQ
RRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKG
MPGDLLSHFTRTRILNKPMNMQLLGDAVAQPERRGGGRPGGERRDGAAPRRSFGGGERRE
GNANGGERRERSFNRDAAAPRAPRRRPADA
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttatttacttctttttccgatttggggctgtctgctcctattattaatgcc
ctgaccgatctgggctatgaaaaaccatcgccgattcaggctgaatgtattcctcacttg
ctgaacggtcgtgatgtgctgggtatggcacagaccggtagcggtaaaactgcggctttt
gctctgccattactcaataatttaaaacctgagttaaaagcaccgcagatgctggtgctg
gctccaacccgcgagttagctgttcaggttgctgaagcctgtaatgattttgccaagcat
atgcacggcgttaatgttgttgccctgtacggcggccagcgttatgacgttcaactgcgc
gctttgcgtgggggagcacagatcgttgtgggtactcctggtcgtctgctggaccacctt
aaacgcggtacgctggatctgtccaacctgagtggtttggtgctggatgaagcggatgaa
atgctgcgtatgggcttcatcgaagatgttgaaaacatcatggctcagatccctgctgaa
catcagactgcgctgttctctgcaaccatgccggaagcgattcgccgcattacgcgtcgt
ttcatgaaagatccgcaggaagttcgcattcaatcaagcgtgactacgcgtccagacatc
agccagagctactggacggtgcagggtatgcgtaaaaatgaagcgttggtgcgtttcctg
gaagcggaagattttgatgcggcgattattttcgttcgtaccaagaatgcgacgctggaa
gtggccgaagccttggagcgtagcggttacaacagcgccgcgctgaatggtgacatgaat
caggcgttgcgtgagcaaacgttggagcgtctgaaagatggccgtcttgatatcctgatc
gcaaccgacgttgcggcgcgtggtctggacgttgagcgtatcagcctggtagtgaactac
gatatcccgatggattccgagtcttacgttcaccgtattggccgtaccggtcgtgcaggt
cgtgcgggccgtgctctgctgttcgtcgaaaaccgtgaacgtcgcctgctgcgcaacgtt
gagcgcacaatgaagctgacaattccagaagtggaattgccaaatgcagaattgctgggt
caacgccgtctggctaaatttgcagctaaagtacagcaacagctggaaagcagcgatctg
gacatgtaccgcgcactgttgacgaaactgcaaccgcaggaagagttggacatcgaaaca
ctggctgccgcgttgctgaaaatggcacagggcgaacgtcctctgattctgccgccagat
ccggcatttcgccctcgtcgtgaattccgcgatcgtgatgagtctcgtggtgattcacgt
ggcgatcgtcgccgcgatccgcgtgattcccgtgaaccgcgtgaaggtgatcgtccgcag
cgtcgtgagcgtcgcgatgcgggtgagatggagctgtatcgtatcgaagtgggtcgtgat
gacggtgttgaagttcgccatattgttggtgctatcgccaacgaaggggatatcagcagc
cgttacatcggtaacattaagctgttcgggtcacactcaacgatcgaactgccgaaaggt
atgccgggcgatctgttatcacatttcacccgcacgcgtattctgaacaaaccaatgaat
atgcaattgctgggtgatgcagtcgctcagccagaacgtcgtggcggcggccggcctggt
ggcgaacgtcgtgatggcgcagcgccacgtcgttctttcggcggtggtgaacgccgtgaa
ggtaacgctaacggcggtgagcgtcgcgaacgttctttcaatcgtgatgccgctgcaccg
cgtgctccacgtcgtcgccctgctgacgcgtaa
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