Pectobacterium araliae: PEC302110_20060
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Entry
PEC302110_20060 CDS
T10257
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
parl Pectobacterium araliae
Brite
KEGG Orthology (KO) [BR:
parl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
parl03032
]
PEC302110_20060 (topA)
03400 DNA repair and recombination proteins [BR:
parl03400
]
PEC302110_20060 (topA)
Enzymes [BR:
parl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PEC302110_20060 (topA)
DNA replication proteins [BR:
parl03032
]
Prokaryotic type
DNA Topoisomerases
PEC302110_20060 (topA)
DNA repair and recombination proteins [BR:
parl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PEC302110_20060 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
E217_gp28
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BES84909
UniProt:
A0AAN0KGL9
LinkDB
All DBs
Position
2255579..2258179
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AA seq
866 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHVRDLPTSGSVSKKSADSATKDKTKKKV
KKDEKSALVNRMGVDPYHGWKANYEILPGKEKVVSELKTLAENADHIYLATDLDREGEAI
AWHLREIIGGDDQRFSRVVFNEITKNAITQAFEKPDTLNIDRVNAQQARRFMDRVVGYMV
SPLLWKKIARGLSAGRVQSVAVRLIVEREREIKAFVPEEYWELHADLLAGSDIQLQMQVT
HYNGKPFKPVNKEQTHAAVSLLENARYVVADREDKPTSSKPGAPFITSTLQQAASTRLGF
GVKKTMMMAQRLYEAGYITYMRTDSTNLSQDALTMVRGYIGEAFGKRYLPEAATVYSSKE
NSQEAHEAIRPSDVGVLADTLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLIVEAAD
YQLRAKGRTLRFDGWTKVMPALRKNDEDRTLPTVAVGEALSLQKLLPGQHFTKPPARYSD
ASLVKELEKRGIGRPSTYHSIISTIQDRGYVRADNRRFYAEKMGEIVTDRLEENFRELMN
YDFTARMESRLDQVANNQAEWKAVLDEFFNEFSQQLEKAEQDPEEGGMRPNAMVLTSIDC
PTCSRQMGIRTASTGVFLGCSGYALPPKERCKTTINLIPEAEVLNVLEGDEAETNALRAR
RRCEKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIEVGEFRIKGYDGPIVECEKCGSEMH
LKMGRFGKYMACTSETCSNTRKILRNGDVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGV
FLAANTFPKSRETRAPLVEELVRFKDRLPEKLRYLADAPVVDKDGNKTQVRFSRKTKQQY
VSSEKDGKATGWSAFYIDGKWVEGKK
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgttatcgtcgagtccccggcaaaagccaaaacgattaataagtat
ttaggcaatgactacgtggtgaaatccagcgtcggtcatgtacgcgatttgccgacgagt
ggttcagtcagtaaaaagagcgcggactcagcgactaaagataaaacgaaaaagaaagtc
aaaaaggatgagaaatctgcgctggttaatcgtatgggcgtcgatccttatcatggttgg
aaagctaactacgaaatattgccaggtaaggagaaggttgtctccgaactaaaaacactg
gcggaaaatgctgaccacatctatctcgcaaccgaccttgaccgagaaggggaagccatt
gcctggcacctgcgggaaattattggtggtgacgatcagcgtttcagccgcgtagtgttt
aacgaaatcacgaaaaatgccatcacgcaggcgtttgaaaaaccagacacgttgaatatt
gaccgggttaatgcgcagcaggcgcgccggtttatggatcgcgtggtgggttacatggtt
tccccgctgttgtggaaaaaaattgcccgcggtctgtctgccggacgtgtgcagtcggtt
gcggtgcgcctgattgtcgagcgcgagcgtgaaatcaaagcgttcgtgccagaagaatat
tgggaactgcatgccgatttactggcaggcagcgatattcaactgcaaatgcaggtaacg
cactacaacggcaagccgtttaaaccggttaacaaagaacaaacgcatgcggcggttagc
ctgcttgagaacgcacgctatgtggttgctgaccgtgaagataagccgaccagcagcaaa
ccgggtgcgccgttcattacctcaacgctgcaacaggcggccagtacgcgcctaggcttc
ggcgtgaaaaagaccatgatgatggcgcagcgtctgtatgaagcgggctacattacttat
atgcgtactgactctacgaacctcagtcaggatgccttgacgatggtgcgtggttatatc
ggcgaagcgttcggtaagcgctatctgccggaggcggcaaccgtctacagcagtaaagag
aattctcaggaagcgcacgaagccatccgtccttctgatgttggcgtgctggccgatacc
ctgaaagatatggaagccgatgcgcagaagctgtatcagttgatttggcgccagttcgtc
gcgtgtcaaatgacgccagcgcaatacgattccaccacgttaattgtggaagccgctgat
tatcaactgcgtgccaaaggccgtacactgcgttttgatggctggacgaaagtcatgcca
gcgctgcgtaaaaatgatgaagaccgcacgttgccaaccgtggcggtgggcgaagcattg
tcgttgcaaaaactgctgccagggcaacacttcaccaaaccacccgcacgctacagcgat
gcttctctggttaaagagctggaaaaacgcgggattggtcgtccgtctacttatcactct
attatttcgaccattcaggatcgcggttatgttcgggctgataaccgccgtttctacgcc
gagaaaatgggtgaaatcgttaccgatcggttggaagagaacttccgcgaactgatgaat
tacgattttaccgcacggatggaaagccgcctcgatcaggtcgcgaataatcaggcggaa
tggaaagctgtattggatgagtttttcaacgaatttagccagcagttggaaaaggccgaa
caggacccagaagaaggcggtatgcgccctaatgcgatggtattaaccagcattgactgc
ccaacctgctctcgtcagatgggaattcgtactgccagcacaggggtgtttctgggctgt
tccggctatgcactgccgccgaaagagcgctgtaaaaccacgattaatctgataccggaa
gccgaagtgctgaacgtattagaaggtgatgaagccgaaactaacgcgttgcgtgctcgt
cgccgttgtgaaaaatgcggtacggcgatggacagctacctgattgataatcagcgtaag
ctacacgtttgcgggaataaccctgcttgtgacggatatgagatcgaagtcggtgaattc
cgcatcaagggttacgatgggccgatcgttgagtgtgagaaatgtggttccgaaatgcat
ctcaaaatgggacgcttcggtaaatacatggcgtgcaccagcgaaacgtgcagtaacacg
cgtaaaatcttgcgtaatggcgatgttgcgccaccgaaagaagatccggtgccgttgcct
gaactgccttgtgagaagtccgatgcgtatttcgtattgcgtgacggtgcagcaggggta
ttccttgccgccaatacgttcccgaaatctcgtgaaacgcgggcaccgttggtagaagaa
ctggtgcgattcaaagatcgtttaccggaaaaactgcgctatttggccgatgctccggtg
gtcgataaagacggcaataaaacgcaggtgcgctttagccgtaagaccaaacagcaatat
gtctcgtcagaaaaagacggcaaggcaacgggctggtcggcgttttatattgacggaaaa
tgggttgaagggaagaaataa
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