Pectobacterium araliae: PEC302110_22130
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Entry
PEC302110_22130 CDS
T10257
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
parl Pectobacterium araliae
Brite
KEGG Orthology (KO) [BR:
parl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parl03019
]
PEC302110_22130 (hrpA)
Enzymes [BR:
parl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PEC302110_22130 (hrpA)
Messenger RNA biogenesis [BR:
parl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PEC302110_22130 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
T2SSE
nSTAND3
NACHT
nSTAND_NTPase5
DUF6145
PhoH
AAA_25
Zeta_toxin
DUF7217
Vps54_N
Motif
Other DBs
NCBI-ProteinID:
BES85116
UniProt:
A0AAN0KAT4
LinkDB
All DBs
Position
complement(2497224..2501111)
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSPLSALSTQLSELMLRDRQRLRRRLQGAAKVSSPQAQAAIAQEIEGEIVAARQKVENR
RASCPAIHYPEQLPVSQKKDEILEALRHHQVIIVAGETGSGKTTQLPKICLELGRGVHGL
IGHTQPRRLAARTVADRIAAELETPLGGSVGYKVRFNDQVGDNTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFIMGYLRQLLPKRPDLKVIITSATIDPQRFSRHFNNA
PIIEVSGRTYPVDVRYRPVVEDADDSERDQLQAIFDAVDELTREGPGDILVFMSGEREIR
DTAEALTRLDLPHTEILPLYARLSNQEQNRVFQSHHGRRIVLATNVAETSLTVPGIRYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVAAGVCIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAINLAENGHYR
LTPQGQQLAQLPIDPRLARMVLEARKTGCVREVMVITAALSIQDPRERPMDKKQASDEKH
RRFADKDSDFLAFVNLWDYLREQQKALSSSQFRRQCRTDFLNYLRVREWQDIYTQLRQVV
KELGLPVNSEPADYLSIHCSLLTGLLSHIGQKDIEKQEFSGARNARFAIFPGSGLFKKPP
KWTMVAELVETSRLWGRIAARIEPEWIEPLAQHLIKRSYSDPHWEKAQGTVMAQEKVTLF
GLPIVAARKVNYSQIDPTLAREMFIRHALVEGDWQTHHAFFRANLKLLAEVEDLEHKSRR
RDILVDDETLFAFYDQRLPHDVVSSRHFDTWWKTASRDNADLLNFEKSMLIKDGAEKVSA
LDYPNFWHQGSLKLRLSYQFEPGADADGVTVHIPLPILNQVREEGFEWQIPGVRRELTIA
LIKSLPKPLRRNFVPAPNYAEAFLARTTPLEKGLLDALERELRLMTGVTVPREAWQWDQV
PDHLKITFRVIDDKNRTQREGKDLNALKDQLKDKVQQTLSSVVDDGLEQHGLHVWSFGAL
PDCYEQKRGGYSVKAYPALVDEKDSVAIRLFDTPHQQQQVMRHGLRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLDLIDDCIACAVDKLIESSGGPVWQEDAFQQLHEKVRAEL
NETVVEIAKQVEQILTAVFAINKRLKGRVDMAMALALSDIKNQMSGLVFRGFVTQNGWQR
LPDVLRYLHAIERRLEKLAQDVHRDRAQMLKVELVQQAWQQWSNKLPAERRDDDDVKAVR
WMLEELRVSYFAQQLGTPFPISDKRVLQAMEQVEG
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcacctctcagtgcattatctacgcagttaagtgagctaatgcttcgcgatcgg
caacgtctgcgccgccgtttgcagggcgcggcgaaggtcagcagcccgcaagctcaggcg
gcgatcgctcaggaaattgagggggaaattgttgcggcgcgccagaaagtcgagaatcgg
cgggcaagctgtccggcgattcactatcctgaacagcttcctgttagccagaaaaaagac
gagatactggaggcgctgcgtcatcatcaggtgattatcgtcgcaggtgaaacgggatcg
ggtaagaccacgcaactgccgaaaatctgtctcgaactggggcgcggcgtgcacggcctg
atcggtcacacgcagccgcgtcgtctggcagccagaaccgttgctgaccgcattgctgcc
gagctggaaacgccactgggtggcagcgtgggttataaggtccggtttaacgatcaggtc
ggtgacaatacgctggtcaaactgatgaccgacggtattctgctggcagaaattcagcag
gatcgcctgttgatgcagtacgacacgctgattatcgatgaggcgcacgagcgcagcctg
aatatcgattttatcatgggttatttgcgacagctgttgccaaaacgccctgatttaaaa
gtaattattacgtcggcaaccatcgatccgcagcgtttctctcgccactttaataatgca
ccgatcatcgaagtgtccggcaggacgtatccggtagatgtccgttaccgtccggtggtg
gaagacgctgacgacagcgagcgcgatcagctacaggccatttttgatgcggtcgatgaa
ctgacgcgcgaagggccgggtgatattctggtcttcatgagcggcgaacgtgaaatccgc
gataccgcagaggcgctgacccgtctggatttgccgcataccgaaattttgccgttgtat
gcccgtttgtcgaatcaggaacagaaccgcgtctttcagtcacaccatgggcgccgcatt
gtgctggcgaccaacgtggcggaaacctcactcaccgtcccagggattcgttacgtgatc
gatccaggtacggcgcgtatcagccgctatagcttccgcaccaaggtacagcgcttgccg
attgaacctgtctctcaggcgtcggcgaatcagcgtaaaggacgctgtggccgtgtcgcc
gctggggtgtgtatccgcctctattccgaacaggatttcctgtctcgacctgaatttacc
gatcccgaaattcttcgcaccaatctggcttccgttattttgcaaatgacgtcgttgggg
ctaggtgatatcgccgcgttcccgtttgttgaagcaccggataagcgcaatattcaggac
ggcgtgcggttgctggaagagttaggcgcaattaatctggcggagaatggacattatcgc
ctgacgccgcaggggcaacagctggcgcaattgccgatcgatccacgtttggcgcgaatg
gtgctggaagcgcgtaaaaccggctgtgtgcgtgaggtgatggtgatcactgccgcgctg
tcgattcaggacccgcgtgaaaggccgatggataagaagcaggcgtcggatgaaaaacat
cgtcgctttgccgataaagactctgattttctggccttcgtcaatctgtgggactatctg
cgtgaacagcagaaggcgctgtcttccagccaattccgccgtcagtgtcgtaccgatttt
cttaactacctgcgcgtgcgtgaatggcaggatatctacacgcagctgcgtcaggtagtg
aaagaattagggctgccggtcaacagtgaaccggccgattatctgagcattcactgctcg
ttgctcactggcttgttgtcgcatatcggacagaaagatattgagaaacaagaattcagc
ggtgcgcgtaacgcccggtttgcgattttccctggctctgggttattcaaaaaaccgcca
aaatggacgatggtggctgaactggtggaaaccagccgcctgtggggacgcattgccgcg
cgtattgaacccgaatggatcgagccgctggctcagcacctgattaagcggagctacagc
gatcctcactgggagaaagcgcagggcacggtgatggcgcaggagaaggtgacgctcttc
gggctgccgattgtcgcggcacgcaaggtgaattacagccaaatcgatccgacgctggca
cgagagatgttcatccgccacgcgctggtggaaggcgattggcaaacgcatcacgctttt
ttccgcgccaacctcaaactgttagcggaggtggaagatttagaacataaatcacgccgc
cgcgacattttggtggatgacgaaacactgttcgctttctatgaccagcgcttgccgcac
gatgtagtgtcgtcacgtcattttgatacatggtggaaaacggccagccgggataacgcc
gacctgcttaattttgaaaagagcatgttgatcaaagacggcgcggagaaggtgagtgcg
ctggattacccgaatttctggcatcagggcagcctgaaattacgcttgtcctatcagttt
gaaccgggcgcggatgcggatggcgtaacggtgcacattccgctgcctattctcaatcag
gtacgtgaagagggctttgaatggcagattcccggcgtgcgacgcgaactgacgattgcg
ctgattaaatcgttgcccaagccgttacgccgtaactttgtccctgcgccgaactatgcc
gaggcgtttctggcgcgtaccacgcccttagagaaagggttattggatgcgctggaacga
gaactgcggttgatgacgggtgtgacggtgccgcgtgaggcgtggcagtgggatcaggtg
cccgatcatctgaaaatcacgttccgtgtcatcgatgacaagaatcgtacgcagcgcgaa
ggtaaagacctcaacgcgctgaaagatcagctcaaggataaagtccagcaaacgctgtca
tccgtggtggatgatggtttggagcagcacggtctgcacgtctggagcttcggtgcgctg
ccggattgttatgagcagaaacgaggcggctactctgtcaaagcttatcctgcattagtg
gatgaaaaagatagcgtggcgattcgcttatttgatacgccacaccagcagcaacaggtt
atgcggcacgggttacgccgtctgttactgctgaatattccatcgccgatcaaatatttg
catgaaaaattaccaaacaaggcaaagctcggtctctatttcaatccgtacggcaaagtg
ctggatctcatcgatgattgtatcgcctgtgcggtagacaaactgattgagtcatcaggc
ggtccggtctggcaggaagacgctttccagcagttgcatgaaaaagtacgcgcagagttg
aacgaaacggtggtagagatcgccaagcaggttgagcaaatcttaacggcggtcttcgcc
atcaacaagcgtctgaaagggcgtgtagacatggcgatggcactggcattaagtgatatc
aagaaccaaatgagcggtttagtgttccgtggttttgtgacccaaaacggttggcaacgt
ctgccggatgtgttgcgttatctgcatgcgatagagcgccgtctggagaaattggcgcag
gatgtccaccgtgacagagcgcaaatgttgaaagttgaactggttcaacaggcatggcag
cagtggtcgaataaattgcctgcggagcgacgcgacgatgatgatgtgaaagcggtgcgc
tggatgcttgaggaactgcgcgtcagttactttgctcaacagctagggacaccattcccg
atctcggataagcgcgtattacaggcgatggagcaggtggaagggtaa
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integrated database retrieval system
