Pectobacterium araliae: PEC302110_22290
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Entry
PEC302110_22290 CDS
T10257
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
parl Pectobacterium araliae
Pathway
parl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
parl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PEC302110_22290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parl03019
]
PEC302110_22290
03400 DNA repair and recombination proteins [BR:
parl03400
]
PEC302110_22290
Enzymes [BR:
parl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PEC302110_22290
Messenger RNA biogenesis [BR:
parl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PEC302110_22290
DNA repair and recombination proteins [BR:
parl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PEC302110_22290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
BES85132
UniProt:
A0AAN0KAS8
LinkDB
All DBs
Position
complement(2518526..2520643)
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AA seq
705 aa
AA seq
DB search
MDQEQALQLLQTALADPDAQFRDGQWEAIDALVNRQQKLLVVQRTGWGKSSVYFISTKIF
RDRGMGPTIIVSPLLALMRNQIDSAGRLGIVAETLNSTNRDDWDSVAQRIISNQVDCLLI
SPERLANDSFVETVLQPIADRIALMVIDEAHCISDWGHDFRPDYRRIVNILRQLPANTPV
LGTTATANNRVIEDIQAQLGNIRIQRGPLIRESLSLQTMRLPDQSSRLAWLAQAIPTLSG
TGIVYVLTQRDAEMVSRWLNRSGIVARPYYSGVTHDDFITSSGTADSDGYRQHLESLLLN
NQIKVLVATTALGMGYDKPDLGFVIHYQMPGSIVAYYQQVGRAGRGIDHAVGILMSGVED
REIHEFFRGSAFPAETQVTEILQALANADGLTLRGIEEQTNLRHGQIEKVLKFLSVESPT
PVINVDRKWRRTPVPYAMDRARIAHLTGQREREWQEMQAYLAETGCKMTFLRHALDDRDT
APCGQCTSCLGRPVVAISPNTELIHRAGTFIKQTETIIRPNIQVAANAFTEYGFRGNLAQ
NLRAQEGRVLSRWGDAGWGRGVADNKYAGHFSDELVAAMAEMIQQRWQPEPAPEWVCCVP
SRNHPALVPDFARRLAVRLNLPFVDAIHKIRDNQPQKGQQNRFHQCRNLDGAFAVIPSIP
EGAVLLIDDIVDSGWTLAVIAALLQQAGSGCVYPAALASASVSNA
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggatcaagaacaggctctgcaactgttacagacggcattagccgaccctgacgcacag
tttcgcgacgggcagtgggaagcgattgacgcgctggttaaccgccagcagaaattactg
gtagtacagcgtactggctggggaaagagttcggtctattttatcagtacgaaaattttc
cgcgatcgaggcatggggccaactatcattgtttcacccttgttggcgttgatgcgcaac
cagatagattctgccgggcgattagggattgtggcggaaacgctgaactctaccaataga
gatgattgggatagcgtggcgcaacgtatcattagcaatcaggttgattgtttattgatc
tcacctgagcgtctggcgaatgattcatttgttgaaacggtattgcagccgattgccgat
cgtattgccctgatggtgattgacgaagcacactgtatttcggattgggggcatgatttc
cggccagattatcggcgtattgtgaatattttgcgtcaactgcctgcgaatacccctgtt
ctgggtacgacggccacggccaataatcgcgtgattgaggatattcaggcacagctaggc
aatatccgcattcagcgtggcccgcttattcgtgaaagcttgtcgttacagacgatgaga
ttgcctgatcaatcatcgcgtctggcatggctggcacaggccattccaaccttgtcaggt
acggggattgtttatgtgctgacgcagcgtgatgcggagatggtttctcgctggttgaat
cgctcaggcatcgtggcgcggccttattacagcggtgtaacgcatgacgattttatcaca
tcatctgggacggctgattcagatggttatcgccaacaccttgagtcattgctgctgaat
aaccaaattaaagtgttagtggcaacgaccgcattggggatgggttatgacaaacccgat
ctgggctttgtgattcattatcagatgccgggatcgatagtcgcgtattaccagcaggtg
ggtcgtgctgggcgcggtatcgatcatgctgttggtattctgatgtctggcgttgaagat
agagagattcacgaattcttcagggggtcggcttttcccgcagagacgcaagtgactgaa
attttgcaggcgcttgccaatgccgatggcctgacattgcgaggcattgaagaacaaacc
aatcttcgtcatgggcagattgagaaggtcttgaaatttctcagcgtcgagagccccaca
ccagtgataaacgttgaccggaagtggcgcagaacacccgttccgtatgcgatggatcgt
gcccgtattgcacatctgactgggcaacgggaacgggaatggcaggaaatgcaagcgtat
ttggcggagactggctgcaagatgacgtttttgcgtcacgcactggatgatcgagatacg
gcgccgtgtggtcagtgtacttcctgccttggacgtccggtggtcgctatttcgcctaat
actgagcttattcatcgggctggaacgtttatcaaacagacggaaactattattcggcca
aatatacaggtcgccgctaatgcttttactgaatatggttttcgcggaaatctggcgcag
aacttgcgtgctcaagaagggcgtgtcttgtcccgctggggggatgcaggatggggaagg
ggggtggcagacaataaatatgcgggccattttagtgacgaattggttgcagcgatggcg
gagatgattcagcaacgctggcagcccgaacctgcacctgaatgggtttgctgtgtccct
tcacgtaatcatcctgcattagtgcctgattttgcccggcgtctggcagtacggttgaac
ctaccgtttgtggatgctattcataaaatacgtgacaatcagccacagaaaggtcaacaa
aaccgcttccatcagtgccgcaatctggacggtgcgtttgccgtcatcccctcgatacca
gaaggtgcggtgttgctgattgatgatattgttgattctggctggacgttggcggtgatt
gccgccttattacaacaagcgggcagtggctgtgtttatccggccgcgctcgcgtctgct
tcggtgagtaatgcatga
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